Hb_004545_180

Information

Type -
Description -
Location Contig4545: 207255-209174
Sequence    

Annotation

kegg
ID rcu:RCOM_1430050
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative (EC:2.7.10.2)
nr
ID XP_002512318.1
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
swissprot
ID P93050
description Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis thaliana GN=RKF3 PE=2 SV=1
trembl
ID B9REZ9
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative OS=Ricinus communis GN=RCOM_1430050 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable lrr receptor-like serine threonine-protein kinase rkf3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004545_180 0.0 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
2 Hb_001221_190 0.1608502421 - - PREDICTED: F-box protein At5g50450 [Jatropha curcas]
3 Hb_009249_020 0.1829460564 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
4 Hb_000422_070 0.1931562 - - conserved hypothetical protein [Ricinus communis]
5 Hb_022149_020 0.2068733745 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009838_020 0.2078899284 - - PREDICTED: cysteine-rich repeat secretory protein 3 [Jatropha curcas]
7 Hb_001711_080 0.2221436472 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Phoenix dactylifera]
8 Hb_004899_340 0.231721723 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
9 Hb_001386_010 0.2348209618 - - PREDICTED: uncharacterized protein LOC105632444 [Jatropha curcas]
10 Hb_001421_030 0.2475712376 - - -
11 Hb_011021_010 0.2554845112 - - kinase, putative [Ricinus communis]
12 Hb_004627_010 0.2656043419 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005941_030 0.2657420182 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
14 Hb_001221_200 0.2659630502 - - -
15 Hb_006693_040 0.2663865479 - - PREDICTED: homeotic protein female sterile-like [Jatropha curcas]
16 Hb_000023_270 0.267851708 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002920_010 0.2685963262 - - PREDICTED: sulfiredoxin, chloroplastic/mitochondrial [Populus euphratica]
18 Hb_150440_010 0.2695356174 - - -
19 Hb_001005_200 0.2742728425 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
20 Hb_014497_040 0.2767955447 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004545_180 Hb_004545_180 Hb_001221_190 Hb_001221_190 Hb_004545_180--Hb_001221_190 Hb_009249_020 Hb_009249_020 Hb_004545_180--Hb_009249_020 Hb_000422_070 Hb_000422_070 Hb_004545_180--Hb_000422_070 Hb_022149_020 Hb_022149_020 Hb_004545_180--Hb_022149_020 Hb_009838_020 Hb_009838_020 Hb_004545_180--Hb_009838_020 Hb_001711_080 Hb_001711_080 Hb_004545_180--Hb_001711_080 Hb_001221_190--Hb_009838_020 Hb_004899_340 Hb_004899_340 Hb_001221_190--Hb_004899_340 Hb_001221_190--Hb_001711_080 Hb_001221_200 Hb_001221_200 Hb_001221_190--Hb_001221_200 Hb_000023_270 Hb_000023_270 Hb_001221_190--Hb_000023_270 Hb_009249_020--Hb_009838_020 Hb_011021_010 Hb_011021_010 Hb_009249_020--Hb_011021_010 Hb_000197_110 Hb_000197_110 Hb_009249_020--Hb_000197_110 Hb_009249_020--Hb_004899_340 Hb_007044_160 Hb_007044_160 Hb_009249_020--Hb_007044_160 Hb_000422_070--Hb_001221_190 Hb_000422_070--Hb_001221_200 Hb_000422_070--Hb_009838_020 Hb_001386_010 Hb_001386_010 Hb_000422_070--Hb_001386_010 Hb_000094_030 Hb_000094_030 Hb_000422_070--Hb_000094_030 Hb_000574_170 Hb_000574_170 Hb_022149_020--Hb_000574_170 Hb_022149_020--Hb_000023_270 Hb_001421_030 Hb_001421_030 Hb_022149_020--Hb_001421_030 Hb_010337_040 Hb_010337_040 Hb_022149_020--Hb_010337_040 Hb_000333_030 Hb_000333_030 Hb_022149_020--Hb_000333_030 Hb_000482_120 Hb_000482_120 Hb_022149_020--Hb_000482_120 Hb_009838_020--Hb_004899_340 Hb_005941_030 Hb_005941_030 Hb_009838_020--Hb_005941_030 Hb_003029_060 Hb_003029_060 Hb_009838_020--Hb_003029_060 Hb_000071_160 Hb_000071_160 Hb_009838_020--Hb_000071_160 Hb_000977_290 Hb_000977_290 Hb_009838_020--Hb_000977_290 Hb_001711_080--Hb_005941_030 Hb_001711_080--Hb_004899_340 Hb_001711_080--Hb_009838_020 Hb_025645_020 Hb_025645_020 Hb_001711_080--Hb_025645_020 Hb_014361_090 Hb_014361_090 Hb_001711_080--Hb_014361_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0206177 0.127135 0.41884 0.130501 0.157802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0185817 0 0.0517689 0.196107

CAGE analysis