Hb_000422_070

Information

Type -
Description -
Location Contig422: 82427-83329
Sequence    

Annotation

kegg
ID rcu:RCOM_1282490
description hypothetical protein
nr
ID XP_002523864.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SCZ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1282490 PE=4 SV=1
Gene Ontology
ID GO:0009535
description transmembrane protein c20orf108

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41724: 82004-82436 , PASA_asmbl_41725: 82450-82897 , PASA_asmbl_41726: 82970-83340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000422_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004545_180 0.1931562 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_001221_190 0.2258154815 - - PREDICTED: F-box protein At5g50450 [Jatropha curcas]
4 Hb_001221_200 0.2317659229 - - -
5 Hb_009838_020 0.2397851476 - - PREDICTED: cysteine-rich repeat secretory protein 3 [Jatropha curcas]
6 Hb_001386_010 0.240255572 - - PREDICTED: uncharacterized protein LOC105632444 [Jatropha curcas]
7 Hb_000094_030 0.2496713348 - - -
8 Hb_001711_080 0.2504683683 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Phoenix dactylifera]
9 Hb_000049_130 0.252416703 - - PREDICTED: uncharacterized protein LOC104879855 [Vitis vinifera]
10 Hb_150440_010 0.2530165549 - - -
11 Hb_007192_020 0.2548383636 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
12 Hb_004631_170 0.2596069855 - - conserved hypothetical protein [Ricinus communis]
13 Hb_022149_020 0.2598156917 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001421_030 0.2606467767 - - -
15 Hb_051257_010 0.2617567315 - - -
16 Hb_002920_010 0.2651728234 - - PREDICTED: sulfiredoxin, chloroplastic/mitochondrial [Populus euphratica]
17 Hb_000186_310 0.2674322997 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006693_040 0.2677109813 - - PREDICTED: homeotic protein female sterile-like [Jatropha curcas]
19 Hb_050034_010 0.271097838 - - PREDICTED: cullin-1 [Jatropha curcas]
20 Hb_000977_290 0.2752334044 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000422_070 Hb_000422_070 Hb_004545_180 Hb_004545_180 Hb_000422_070--Hb_004545_180 Hb_001221_190 Hb_001221_190 Hb_000422_070--Hb_001221_190 Hb_001221_200 Hb_001221_200 Hb_000422_070--Hb_001221_200 Hb_009838_020 Hb_009838_020 Hb_000422_070--Hb_009838_020 Hb_001386_010 Hb_001386_010 Hb_000422_070--Hb_001386_010 Hb_000094_030 Hb_000094_030 Hb_000422_070--Hb_000094_030 Hb_004545_180--Hb_001221_190 Hb_009249_020 Hb_009249_020 Hb_004545_180--Hb_009249_020 Hb_022149_020 Hb_022149_020 Hb_004545_180--Hb_022149_020 Hb_004545_180--Hb_009838_020 Hb_001711_080 Hb_001711_080 Hb_004545_180--Hb_001711_080 Hb_001221_190--Hb_009838_020 Hb_004899_340 Hb_004899_340 Hb_001221_190--Hb_004899_340 Hb_001221_190--Hb_001711_080 Hb_001221_190--Hb_001221_200 Hb_000023_270 Hb_000023_270 Hb_001221_190--Hb_000023_270 Hb_000866_340 Hb_000866_340 Hb_001221_200--Hb_000866_340 Hb_181838_010 Hb_181838_010 Hb_001221_200--Hb_181838_010 Hb_000977_290 Hb_000977_290 Hb_001221_200--Hb_000977_290 Hb_000261_400 Hb_000261_400 Hb_001221_200--Hb_000261_400 Hb_005063_080 Hb_005063_080 Hb_001221_200--Hb_005063_080 Hb_009838_020--Hb_004899_340 Hb_005941_030 Hb_005941_030 Hb_009838_020--Hb_005941_030 Hb_003029_060 Hb_003029_060 Hb_009838_020--Hb_003029_060 Hb_000071_160 Hb_000071_160 Hb_009838_020--Hb_000071_160 Hb_009838_020--Hb_000977_290 Hb_148131_010 Hb_148131_010 Hb_001386_010--Hb_148131_010 Hb_165402_010 Hb_165402_010 Hb_001386_010--Hb_165402_010 Hb_010003_010 Hb_010003_010 Hb_001386_010--Hb_010003_010 Hb_051257_010 Hb_051257_010 Hb_001386_010--Hb_051257_010 Hb_000230_180 Hb_000230_180 Hb_001386_010--Hb_000230_180 Hb_002370_030 Hb_002370_030 Hb_001386_010--Hb_002370_030 Hb_000107_180 Hb_000107_180 Hb_000094_030--Hb_000107_180 Hb_004917_030 Hb_004917_030 Hb_000094_030--Hb_004917_030 Hb_004109_180 Hb_004109_180 Hb_000094_030--Hb_004109_180 Hb_003642_020 Hb_003642_020 Hb_000094_030--Hb_003642_020 Hb_000457_190 Hb_000457_190 Hb_000094_030--Hb_000457_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.17184 0.647558 1.00339 0.172553 0.787735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.164415 0 0.141628 0.572885

CAGE analysis