Hb_000107_180

Information

Type -
Description -
Location Contig107: 132886-135356
Sequence    

Annotation

kegg
ID pmum:103343662
description uncharacterized LOC103343662
nr
ID XP_008245529.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
swissprot
ID -
description -
trembl
ID M5W7G7
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025711mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 045_H18.ab1: 134853-135641

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_180 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
2 Hb_000094_030 0.2564597231 - - -
3 Hb_004917_030 0.2715222571 - - -
4 Hb_002253_090 0.288376018 - - Chitinase 1 precursor, putative [Ricinus communis]
5 Hb_001405_140 0.294382802 - - hypothetical protein POPTR_0004s08350g, partial [Populus trichocarpa]
6 Hb_000099_140 0.2987073949 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
7 Hb_004088_050 0.3027168255 - - hypothetical protein VITISV_027174 [Vitis vinifera]
8 Hb_053272_010 0.312399039 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
9 Hb_000116_070 0.3137485522 transcription factor TF Family: C2H2 hypothetical protein JCGZ_22381 [Jatropha curcas]
10 Hb_000556_010 0.3149765356 - - glycerate dehydrogenase, putative [Ricinus communis]
11 Hb_000189_440 0.3209835473 - - hypothetical protein JCGZ_23470 [Jatropha curcas]
12 Hb_141881_010 0.3253988893 - - cytochrome P450, putative [Ricinus communis]
13 Hb_000510_280 0.3299428833 transcription factor TF Family: AUX/IAA PREDICTED: auxin-induced protein 22D-like [Jatropha curcas]
14 Hb_069338_010 0.330597216 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001411_040 0.3368376195 - - hypothetical protein VITISV_010644 [Vitis vinifera]
16 Hb_128196_020 0.3397916599 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Nelumbo nucifera]
17 Hb_002592_020 0.3447243834 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
18 Hb_000496_110 0.3474963296 - - PREDICTED: uncharacterized protein LOC105650214 [Jatropha curcas]
19 Hb_000742_030 0.3508956136 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
20 Hb_000442_110 0.3510216554 - - hypothetical protein POPTR_0010s18960g [Populus trichocarpa]

Gene co-expression network

sample Hb_000107_180 Hb_000107_180 Hb_000094_030 Hb_000094_030 Hb_000107_180--Hb_000094_030 Hb_004917_030 Hb_004917_030 Hb_000107_180--Hb_004917_030 Hb_002253_090 Hb_002253_090 Hb_000107_180--Hb_002253_090 Hb_001405_140 Hb_001405_140 Hb_000107_180--Hb_001405_140 Hb_000099_140 Hb_000099_140 Hb_000107_180--Hb_000099_140 Hb_004088_050 Hb_004088_050 Hb_000107_180--Hb_004088_050 Hb_000422_070 Hb_000422_070 Hb_000094_030--Hb_000422_070 Hb_000094_030--Hb_004917_030 Hb_004109_180 Hb_004109_180 Hb_000094_030--Hb_004109_180 Hb_003642_020 Hb_003642_020 Hb_000094_030--Hb_003642_020 Hb_000457_190 Hb_000457_190 Hb_000094_030--Hb_000457_190 Hb_128196_020 Hb_128196_020 Hb_004917_030--Hb_128196_020 Hb_000294_050 Hb_000294_050 Hb_004917_030--Hb_000294_050 Hb_004917_030--Hb_003642_020 Hb_004917_030--Hb_001405_140 Hb_002200_040 Hb_002200_040 Hb_004917_030--Hb_002200_040 Hb_002200_050 Hb_002200_050 Hb_004917_030--Hb_002200_050 Hb_000116_070 Hb_000116_070 Hb_002253_090--Hb_000116_070 Hb_000347_050 Hb_000347_050 Hb_002253_090--Hb_000347_050 Hb_000272_040 Hb_000272_040 Hb_002253_090--Hb_000272_040 Hb_141881_010 Hb_141881_010 Hb_002253_090--Hb_141881_010 Hb_001411_040 Hb_001411_040 Hb_002253_090--Hb_001411_040 Hb_000390_190 Hb_000390_190 Hb_001405_140--Hb_000390_190 Hb_000172_380 Hb_000172_380 Hb_001405_140--Hb_000172_380 Hb_000445_150 Hb_000445_150 Hb_001405_140--Hb_000445_150 Hb_003642_010 Hb_003642_010 Hb_001405_140--Hb_003642_010 Hb_000291_290 Hb_000291_290 Hb_001405_140--Hb_000291_290 Hb_007477_050 Hb_007477_050 Hb_001405_140--Hb_007477_050 Hb_053272_010 Hb_053272_010 Hb_000099_140--Hb_053272_010 Hb_000005_140 Hb_000005_140 Hb_000099_140--Hb_000005_140 Hb_069338_010 Hb_069338_010 Hb_000099_140--Hb_069338_010 Hb_002119_140 Hb_002119_140 Hb_000099_140--Hb_002119_140 Hb_002876_340 Hb_002876_340 Hb_000099_140--Hb_002876_340 Hb_022092_080 Hb_022092_080 Hb_000099_140--Hb_022092_080 Hb_000363_450 Hb_000363_450 Hb_004088_050--Hb_000363_450 Hb_000049_130 Hb_000049_130 Hb_004088_050--Hb_000049_130 Hb_001814_060 Hb_001814_060 Hb_004088_050--Hb_001814_060 Hb_181838_010 Hb_181838_010 Hb_004088_050--Hb_181838_010 Hb_002477_020 Hb_002477_020 Hb_004088_050--Hb_002477_020 Hb_003540_100 Hb_003540_100 Hb_004088_050--Hb_003540_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0322025 0 0.0771733 0.211447 0 0.0890249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.139136 0 0 0.187985

CAGE analysis