Hb_001411_040

Information

Type -
Description -
Location Contig1411: 82205-83668
Sequence    

Annotation

kegg
ID vvi:104879951
description uncharacterized LOC104879951
nr
ID CAN76018.1
description hypothetical protein VITISV_010644 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5ASU7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010644 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001411_040 0.0 - - hypothetical protein VITISV_010644 [Vitis vinifera]
2 Hb_001755_030 0.2409563218 - - PREDICTED: D-glycerate 3-kinase, chloroplastic-like [Populus euphratica]
3 Hb_000402_100 0.2437622955 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
4 Hb_001405_140 0.2533736568 - - hypothetical protein POPTR_0004s08350g, partial [Populus trichocarpa]
5 Hb_000879_230 0.254807289 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
6 Hb_001294_030 0.2619565528 - - PREDICTED: uncharacterized protein LOC105644307 [Jatropha curcas]
7 Hb_007632_170 0.2624866075 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
8 Hb_004934_120 0.2625830985 - - -
9 Hb_027472_100 0.2640311763 - - PREDICTED: uncharacterized protein LOC105646173 [Jatropha curcas]
10 Hb_000627_300 0.2712720186 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
11 Hb_004545_010 0.2740111404 - - acyl carrier protein [Ricinus communis]
12 Hb_079513_010 0.2752243506 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
13 Hb_000152_480 0.2753421396 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
14 Hb_000191_080 0.2762695353 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
15 Hb_003181_060 0.2764197071 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
16 Hb_003038_100 0.2766183636 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
17 Hb_012098_090 0.2779496447 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
18 Hb_003813_020 0.2785527432 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
19 Hb_004109_160 0.2798176053 - - PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic [Jatropha curcas]
20 Hb_001790_030 0.280198294 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001411_040 Hb_001411_040 Hb_001755_030 Hb_001755_030 Hb_001411_040--Hb_001755_030 Hb_000402_100 Hb_000402_100 Hb_001411_040--Hb_000402_100 Hb_001405_140 Hb_001405_140 Hb_001411_040--Hb_001405_140 Hb_000879_230 Hb_000879_230 Hb_001411_040--Hb_000879_230 Hb_001294_030 Hb_001294_030 Hb_001411_040--Hb_001294_030 Hb_007632_170 Hb_007632_170 Hb_001411_040--Hb_007632_170 Hb_000627_300 Hb_000627_300 Hb_001755_030--Hb_000627_300 Hb_001755_030--Hb_001294_030 Hb_000152_480 Hb_000152_480 Hb_001755_030--Hb_000152_480 Hb_007426_170 Hb_007426_170 Hb_001755_030--Hb_007426_170 Hb_000112_060 Hb_000112_060 Hb_001755_030--Hb_000112_060 Hb_114861_010 Hb_114861_010 Hb_001755_030--Hb_114861_010 Hb_001204_020 Hb_001204_020 Hb_000402_100--Hb_001204_020 Hb_000003_360 Hb_000003_360 Hb_000402_100--Hb_000003_360 Hb_006452_230 Hb_006452_230 Hb_000402_100--Hb_006452_230 Hb_000175_190 Hb_000175_190 Hb_000402_100--Hb_000175_190 Hb_002759_110 Hb_002759_110 Hb_000402_100--Hb_002759_110 Hb_000390_190 Hb_000390_190 Hb_001405_140--Hb_000390_190 Hb_000172_380 Hb_000172_380 Hb_001405_140--Hb_000172_380 Hb_000445_150 Hb_000445_150 Hb_001405_140--Hb_000445_150 Hb_003642_010 Hb_003642_010 Hb_001405_140--Hb_003642_010 Hb_000291_290 Hb_000291_290 Hb_001405_140--Hb_000291_290 Hb_007477_050 Hb_007477_050 Hb_001405_140--Hb_007477_050 Hb_000176_010 Hb_000176_010 Hb_000879_230--Hb_000176_010 Hb_009780_050 Hb_009780_050 Hb_000879_230--Hb_009780_050 Hb_027298_010 Hb_027298_010 Hb_000879_230--Hb_027298_010 Hb_001307_110 Hb_001307_110 Hb_000879_230--Hb_001307_110 Hb_003181_060 Hb_003181_060 Hb_000879_230--Hb_003181_060 Hb_001450_030 Hb_001450_030 Hb_000879_230--Hb_001450_030 Hb_001294_030--Hb_000152_480 Hb_003935_080 Hb_003935_080 Hb_001294_030--Hb_003935_080 Hb_001621_060 Hb_001621_060 Hb_001294_030--Hb_001621_060 Hb_004109_160 Hb_004109_160 Hb_001294_030--Hb_004109_160 Hb_001792_030 Hb_001792_030 Hb_001294_030--Hb_001792_030 Hb_005846_030 Hb_005846_030 Hb_007632_170--Hb_005846_030 Hb_001898_180 Hb_001898_180 Hb_007632_170--Hb_001898_180 Hb_010577_040 Hb_010577_040 Hb_007632_170--Hb_010577_040 Hb_019040_030 Hb_019040_030 Hb_007632_170--Hb_019040_030 Hb_000156_210 Hb_000156_210 Hb_007632_170--Hb_000156_210 Hb_002078_300 Hb_002078_300 Hb_007632_170--Hb_002078_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.109536 0 0.166405 0.140791 0 0.0384679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.10023 0.315091 0 0.0322949 0.457697

CAGE analysis