Hb_001204_020

Information

Type -
Description -
Location Contig1204: 28503-30223
Sequence    

Annotation

kegg
ID tcc:TCM_021965
description hypothetical protein
nr
ID XP_007027061.1
description Uncharacterized protein TCM_021965 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061ESB2
description Uncharacterized protein OS=Theobroma cacao GN=TCM_021965 PE=4 SV=1
Gene Ontology
ID GO:0005886
description p-hydroxybenzoic acid efflux pump subunit aaeb

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06312: 28913-29021 , PASA_asmbl_06314: 29877-30210
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001204_020 0.0 - - Uncharacterized protein TCM_021965 [Theobroma cacao]
2 Hb_000402_100 0.2396382619 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
3 Hb_000154_040 0.2994605318 - - hypothetical protein JCGZ_25602 [Jatropha curcas]
4 Hb_000003_360 0.3026835127 - - Putative inactive purple acid phosphatase 27 [Glycine soja]
5 Hb_003124_020 0.3222628083 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
6 Hb_011249_050 0.3314293813 - - -
7 Hb_153216_010 0.3351166484 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
8 Hb_017845_010 0.339197971 - - -
9 Hb_003938_070 0.3424357715 - - ring finger protein, putative [Ricinus communis]
10 Hb_006059_020 0.3449337233 - - PREDICTED: uncharacterized protein LOC105648672 [Jatropha curcas]
11 Hb_178968_160 0.3449960457 - - -
12 Hb_005345_010 0.3470588636 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
13 Hb_001882_060 0.3490459188 - - -
14 Hb_002713_080 0.3507881136 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
15 Hb_002759_110 0.3555652466 - - RNA-binding family protein, putative isoform 1 [Theobroma cacao]
16 Hb_000753_190 0.3582386481 - - PREDICTED: D-aminoacyl-tRNA deacylase [Populus euphratica]
17 Hb_035273_010 0.359149735 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
18 Hb_004934_120 0.3599133255 - - -
19 Hb_000300_080 0.3611974571 - - PREDICTED: probable S-sulfocysteine synthase, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_003673_040 0.3623141035 - - dynamin family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001204_020 Hb_001204_020 Hb_000402_100 Hb_000402_100 Hb_001204_020--Hb_000402_100 Hb_000154_040 Hb_000154_040 Hb_001204_020--Hb_000154_040 Hb_000003_360 Hb_000003_360 Hb_001204_020--Hb_000003_360 Hb_003124_020 Hb_003124_020 Hb_001204_020--Hb_003124_020 Hb_011249_050 Hb_011249_050 Hb_001204_020--Hb_011249_050 Hb_153216_010 Hb_153216_010 Hb_001204_020--Hb_153216_010 Hb_001411_040 Hb_001411_040 Hb_000402_100--Hb_001411_040 Hb_000402_100--Hb_000003_360 Hb_006452_230 Hb_006452_230 Hb_000402_100--Hb_006452_230 Hb_000175_190 Hb_000175_190 Hb_000402_100--Hb_000175_190 Hb_002759_110 Hb_002759_110 Hb_000402_100--Hb_002759_110 Hb_000510_080 Hb_000510_080 Hb_000154_040--Hb_000510_080 Hb_002872_050 Hb_002872_050 Hb_000154_040--Hb_002872_050 Hb_000742_280 Hb_000742_280 Hb_000154_040--Hb_000742_280 Hb_007894_050 Hb_007894_050 Hb_000154_040--Hb_007894_050 Hb_000085_350 Hb_000085_350 Hb_000154_040--Hb_000085_350 Hb_005345_010 Hb_005345_010 Hb_000154_040--Hb_005345_010 Hb_000156_210 Hb_000156_210 Hb_000003_360--Hb_000156_210 Hb_000191_080 Hb_000191_080 Hb_000003_360--Hb_000191_080 Hb_001435_020 Hb_001435_020 Hb_000003_360--Hb_001435_020 Hb_101430_010 Hb_101430_010 Hb_000003_360--Hb_101430_010 Hb_000530_120 Hb_000530_120 Hb_000003_360--Hb_000530_120 Hb_000230_030 Hb_000230_030 Hb_003124_020--Hb_000230_030 Hb_003057_010 Hb_003057_010 Hb_003124_020--Hb_003057_010 Hb_132998_010 Hb_132998_010 Hb_003124_020--Hb_132998_010 Hb_006738_020 Hb_006738_020 Hb_003124_020--Hb_006738_020 Hb_000574_460 Hb_000574_460 Hb_003124_020--Hb_000574_460 Hb_002243_070 Hb_002243_070 Hb_003124_020--Hb_002243_070 Hb_068804_040 Hb_068804_040 Hb_011249_050--Hb_068804_040 Hb_057098_010 Hb_057098_010 Hb_011249_050--Hb_057098_010 Hb_000098_290 Hb_000098_290 Hb_011249_050--Hb_000098_290 Hb_058722_010 Hb_058722_010 Hb_011249_050--Hb_058722_010 Hb_000679_060 Hb_000679_060 Hb_011249_050--Hb_000679_060 Hb_011861_060 Hb_011861_060 Hb_011249_050--Hb_011861_060 Hb_004931_010 Hb_004931_010 Hb_153216_010--Hb_004931_010 Hb_092820_010 Hb_092820_010 Hb_153216_010--Hb_092820_010 Hb_006588_010 Hb_006588_010 Hb_153216_010--Hb_006588_010 Hb_004691_040 Hb_004691_040 Hb_153216_010--Hb_004691_040 Hb_001017_080 Hb_001017_080 Hb_153216_010--Hb_001017_080 Hb_035905_010 Hb_035905_010 Hb_153216_010--Hb_035905_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.126631 0 0.13673 0 0.0522543 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.129944 0.306268 0 0.127091 0.191681

CAGE analysis