Hb_003124_020

Information

Type transcription factor
Description TF Family: NAC
Location Contig3124: 3750-19358
Sequence    

Annotation

kegg
ID tcc:TCM_006519
description SAUR-like auxin-responsive protein family, putative
nr
ID XP_011004583.1
description PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
swissprot
ID Q9C7Q1
description Auxin-responsive protein SAUR66 OS=Arabidopsis thaliana GN=SAUR66 PE=2 SV=1
trembl
ID A0A061DXK4
description SAUR-like auxin-responsive protein family, putative OS=Theobroma cacao GN=TCM_006519 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33009: 12224-12583
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003124_020 0.0 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
2 Hb_000230_030 0.2233971766 - - hypothetical protein B456_013G2021001, partial [Gossypium raimondii]
3 Hb_003057_010 0.2699669444 - - hypothetical protein JCGZ_06666 [Jatropha curcas]
4 Hb_132998_010 0.272399653 - - hypothetical protein JCGZ_00197 [Jatropha curcas]
5 Hb_006738_020 0.2771012601 - - hypothetical protein VITISV_010510 [Vitis vinifera]
6 Hb_000574_460 0.2842423442 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
7 Hb_002243_070 0.2911292657 - - sodium-bile acid cotransporter, putative [Ricinus communis]
8 Hb_004934_120 0.2929070231 - - -
9 Hb_000286_090 0.304634423 transcription factor TF Family: B3 hypothetical protein JCGZ_00197 [Jatropha curcas]
10 Hb_001366_070 0.3050577864 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 4-like isoform X2 [Jatropha curcas]
11 Hb_000156_210 0.3064944163 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
12 Hb_001493_120 0.3088469546 - - -
13 Hb_002131_030 0.3088920294 - - PREDICTED: pyruvate kinase isozyme G, chloroplastic [Jatropha curcas]
14 Hb_000703_270 0.3105786245 - - hypothetical protein B456_012G039600 [Gossypium raimondii]
15 Hb_000753_190 0.3131530577 - - PREDICTED: D-aminoacyl-tRNA deacylase [Populus euphratica]
16 Hb_000203_140 0.3143777724 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
17 Hb_005545_040 0.3153264494 - - PREDICTED: protein LURP-one-related 14 isoform X2 [Nelumbo nucifera]
18 Hb_001204_020 0.3222628083 - - Uncharacterized protein TCM_021965 [Theobroma cacao]
19 Hb_003688_070 0.3227298246 - - PREDICTED: mitochondrial substrate carrier family protein E [Jatropha curcas]
20 Hb_012022_170 0.3283056932 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]

Gene co-expression network

sample Hb_003124_020 Hb_003124_020 Hb_000230_030 Hb_000230_030 Hb_003124_020--Hb_000230_030 Hb_003057_010 Hb_003057_010 Hb_003124_020--Hb_003057_010 Hb_132998_010 Hb_132998_010 Hb_003124_020--Hb_132998_010 Hb_006738_020 Hb_006738_020 Hb_003124_020--Hb_006738_020 Hb_000574_460 Hb_000574_460 Hb_003124_020--Hb_000574_460 Hb_002243_070 Hb_002243_070 Hb_003124_020--Hb_002243_070 Hb_000635_260 Hb_000635_260 Hb_000230_030--Hb_000635_260 Hb_000230_030--Hb_003057_010 Hb_000230_030--Hb_000574_460 Hb_002131_030 Hb_002131_030 Hb_000230_030--Hb_002131_030 Hb_000230_030--Hb_132998_010 Hb_000631_070 Hb_000631_070 Hb_003057_010--Hb_000631_070 Hb_003057_010--Hb_002131_030 Hb_001595_080 Hb_001595_080 Hb_003057_010--Hb_001595_080 Hb_000703_270 Hb_000703_270 Hb_003057_010--Hb_000703_270 Hb_002304_070 Hb_002304_070 Hb_003057_010--Hb_002304_070 Hb_000286_090 Hb_000286_090 Hb_132998_010--Hb_000286_090 Hb_001163_090 Hb_001163_090 Hb_132998_010--Hb_001163_090 Hb_021888_060 Hb_021888_060 Hb_132998_010--Hb_021888_060 Hb_002289_090 Hb_002289_090 Hb_132998_010--Hb_002289_090 Hb_001493_120 Hb_001493_120 Hb_132998_010--Hb_001493_120 Hb_002872_050 Hb_002872_050 Hb_006738_020--Hb_002872_050 Hb_000056_070 Hb_000056_070 Hb_006738_020--Hb_000056_070 Hb_000072_200 Hb_000072_200 Hb_006738_020--Hb_000072_200 Hb_003050_280 Hb_003050_280 Hb_006738_020--Hb_003050_280 Hb_000457_290 Hb_000457_290 Hb_006738_020--Hb_000457_290 Hb_000208_180 Hb_000208_180 Hb_006738_020--Hb_000208_180 Hb_000574_460--Hb_001493_120 Hb_073490_020 Hb_073490_020 Hb_000574_460--Hb_073490_020 Hb_001490_030 Hb_001490_030 Hb_000574_460--Hb_001490_030 Hb_091194_010 Hb_091194_010 Hb_000574_460--Hb_091194_010 Hb_000574_460--Hb_006738_020 Hb_000429_090 Hb_000429_090 Hb_000574_460--Hb_000429_090 Hb_042202_050 Hb_042202_050 Hb_002243_070--Hb_042202_050 Hb_002888_020 Hb_002888_020 Hb_002243_070--Hb_002888_020 Hb_004734_050 Hb_004734_050 Hb_002243_070--Hb_004734_050 Hb_003005_040 Hb_003005_040 Hb_002243_070--Hb_003005_040 Hb_004097_060 Hb_004097_060 Hb_002243_070--Hb_004097_060 Hb_000156_210 Hb_000156_210 Hb_002243_070--Hb_000156_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.117226 0 0.0674987 0.0381459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.157597 0.421549 0.0465741 0.287073 0.414873

CAGE analysis