Hb_002888_020

Information

Type -
Description -
Location Contig2888: 10417-17660
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30136: 13585-13862 , PASA_asmbl_30139: 15912-16125
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002888_020 0.0 - - -
2 Hb_002243_070 0.2455136927 - - sodium-bile acid cotransporter, putative [Ricinus communis]
3 Hb_039262_010 0.2469811773 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_002874_040 0.2474471686 - - -
5 Hb_004440_080 0.2607260683 - - PREDICTED: syntaxin-112 [Populus euphratica]
6 Hb_086077_020 0.2721738481 - - hypothetical protein PHAVU_001G054900g [Phaseolus vulgaris]
7 Hb_000012_160 0.2745369265 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
8 Hb_133820_010 0.2800335996 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_131102_010 0.2806391035 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_131872_010 0.2868007498 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_001172_090 0.2883194791 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
12 Hb_007276_020 0.2887655096 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
13 Hb_007894_220 0.2910707697 - - PREDICTED: probable folate-biopterin transporter 4 [Jatropha curcas]
14 Hb_000052_020 0.2936109227 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
15 Hb_010977_010 0.2966407349 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_000296_080 0.2970144995 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Jatropha curcas]
17 Hb_005588_110 0.2988440004 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
18 Hb_001158_010 0.2991671128 - - hypothetical protein, partial [Pseudomonas fluorescens]
19 Hb_042202_050 0.3044776167 - - TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]
20 Hb_002518_120 0.3057799989 - - hypothetical protein RCOM_0731250 [Ricinus communis]

Gene co-expression network

sample Hb_002888_020 Hb_002888_020 Hb_002243_070 Hb_002243_070 Hb_002888_020--Hb_002243_070 Hb_039262_010 Hb_039262_010 Hb_002888_020--Hb_039262_010 Hb_002874_040 Hb_002874_040 Hb_002888_020--Hb_002874_040 Hb_004440_080 Hb_004440_080 Hb_002888_020--Hb_004440_080 Hb_086077_020 Hb_086077_020 Hb_002888_020--Hb_086077_020 Hb_000012_160 Hb_000012_160 Hb_002888_020--Hb_000012_160 Hb_042202_050 Hb_042202_050 Hb_002243_070--Hb_042202_050 Hb_004734_050 Hb_004734_050 Hb_002243_070--Hb_004734_050 Hb_003005_040 Hb_003005_040 Hb_002243_070--Hb_003005_040 Hb_004097_060 Hb_004097_060 Hb_002243_070--Hb_004097_060 Hb_000156_210 Hb_000156_210 Hb_002243_070--Hb_000156_210 Hb_016482_010 Hb_016482_010 Hb_039262_010--Hb_016482_010 Hb_000976_230 Hb_000976_230 Hb_039262_010--Hb_000976_230 Hb_036311_020 Hb_036311_020 Hb_039262_010--Hb_036311_020 Hb_000399_010 Hb_000399_010 Hb_039262_010--Hb_000399_010 Hb_039262_010--Hb_042202_050 Hb_000052_020 Hb_000052_020 Hb_002874_040--Hb_000052_020 Hb_002918_050 Hb_002918_050 Hb_002874_040--Hb_002918_050 Hb_003734_110 Hb_003734_110 Hb_002874_040--Hb_003734_110 Hb_007426_160 Hb_007426_160 Hb_002874_040--Hb_007426_160 Hb_002874_040--Hb_000012_160 Hb_004440_080--Hb_086077_020 Hb_000012_460 Hb_000012_460 Hb_004440_080--Hb_000012_460 Hb_000258_340 Hb_000258_340 Hb_004440_080--Hb_000258_340 Hb_002602_020 Hb_002602_020 Hb_004440_080--Hb_002602_020 Hb_010977_010 Hb_010977_010 Hb_004440_080--Hb_010977_010 Hb_086077_020--Hb_000012_460 Hb_086077_020--Hb_000258_340 Hb_086077_020--Hb_010977_010 Hb_000772_040 Hb_000772_040 Hb_086077_020--Hb_000772_040 Hb_133820_010 Hb_133820_010 Hb_086077_020--Hb_133820_010 Hb_005282_020 Hb_005282_020 Hb_000012_160--Hb_005282_020 Hb_003544_010 Hb_003544_010 Hb_000012_160--Hb_003544_010 Hb_002518_120 Hb_002518_120 Hb_000012_160--Hb_002518_120 Hb_007894_220 Hb_007894_220 Hb_000012_160--Hb_007894_220 Hb_002685_060 Hb_002685_060 Hb_000012_160--Hb_002685_060 Hb_002282_070 Hb_002282_070 Hb_000012_160--Hb_002282_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0564621 0 0 0 0.0705401 0.0399757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.129045 0.0676703 0.0627805 0.0814002 0.48879

CAGE analysis