Hb_007426_160

Information

Type -
Description -
Location Contig7426: 159607-161598
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56552: 157880-160295 , PASA_asmbl_56553: 157880-160295
cDNA
(Sanger)
(ID:Location)		 002_C16.ab1: 159979-160295 , 015_J03.ab1: 160014-160295

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007426_160 0.0 - - -
2 Hb_000012_460 0.1851960536 - - unknown [Populus trichocarpa]
3 Hb_001439_060 0.1984190368 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
4 Hb_000932_100 0.200155654 - - -
5 Hb_000160_320 0.2022901969 - - hypothetical protein POPTR_0004s08730g [Populus trichocarpa]
6 Hb_000630_040 0.2072446861 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
7 Hb_150379_010 0.2075530098 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
8 Hb_001951_180 0.2081990082 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_003734_110 0.2093112263 - - PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Jatropha curcas]
10 Hb_000836_530 0.2094523456 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
11 Hb_000160_300 0.210476093 - - hypothetical protein POPTR_0004s08720g [Populus trichocarpa]
12 Hb_153533_010 0.2117186557 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X3 [Jatropha curcas]
13 Hb_105123_010 0.2132354338 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
14 Hb_000052_020 0.2146215545 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
15 Hb_184403_020 0.214632377 - - PREDICTED: pre-rRNA-processing protein ESF2 [Vitis vinifera]
16 Hb_002791_010 0.21624424 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
17 Hb_000236_070 0.2176444665 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004619_020 0.2178333726 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_022693_060 0.2184126845 - - -
20 Hb_009393_080 0.218624695 - - plant organelle RNA recognition domain protein [Medicago truncatula]

Gene co-expression network

sample Hb_007426_160 Hb_007426_160 Hb_000012_460 Hb_000012_460 Hb_007426_160--Hb_000012_460 Hb_001439_060 Hb_001439_060 Hb_007426_160--Hb_001439_060 Hb_000932_100 Hb_000932_100 Hb_007426_160--Hb_000932_100 Hb_000160_320 Hb_000160_320 Hb_007426_160--Hb_000160_320 Hb_000630_040 Hb_000630_040 Hb_007426_160--Hb_000630_040 Hb_150379_010 Hb_150379_010 Hb_007426_160--Hb_150379_010 Hb_086077_020 Hb_086077_020 Hb_000012_460--Hb_086077_020 Hb_000772_040 Hb_000772_040 Hb_000012_460--Hb_000772_040 Hb_000012_460--Hb_000932_100 Hb_001006_260 Hb_001006_260 Hb_000012_460--Hb_001006_260 Hb_004448_020 Hb_004448_020 Hb_000012_460--Hb_004448_020 Hb_018133_090 Hb_018133_090 Hb_001439_060--Hb_018133_090 Hb_000861_020 Hb_000861_020 Hb_001439_060--Hb_000861_020 Hb_001491_010 Hb_001491_010 Hb_001439_060--Hb_001491_010 Hb_015941_020 Hb_015941_020 Hb_001439_060--Hb_015941_020 Hb_012760_190 Hb_012760_190 Hb_001439_060--Hb_012760_190 Hb_000337_050 Hb_000337_050 Hb_001439_060--Hb_000337_050 Hb_005228_110 Hb_005228_110 Hb_000932_100--Hb_005228_110 Hb_020665_010 Hb_020665_010 Hb_000932_100--Hb_020665_010 Hb_000062_140 Hb_000062_140 Hb_000932_100--Hb_000062_140 Hb_002025_200 Hb_002025_200 Hb_000932_100--Hb_002025_200 Hb_003206_020 Hb_003206_020 Hb_000932_100--Hb_003206_020 Hb_000283_080 Hb_000283_080 Hb_000160_320--Hb_000283_080 Hb_007747_210 Hb_007747_210 Hb_000160_320--Hb_007747_210 Hb_003734_110 Hb_003734_110 Hb_000160_320--Hb_003734_110 Hb_000883_060 Hb_000883_060 Hb_000160_320--Hb_000883_060 Hb_011386_020 Hb_011386_020 Hb_000160_320--Hb_011386_020 Hb_001898_160 Hb_001898_160 Hb_000160_320--Hb_001898_160 Hb_002054_010 Hb_002054_010 Hb_000630_040--Hb_002054_010 Hb_000630_070 Hb_000630_070 Hb_000630_040--Hb_000630_070 Hb_005739_010 Hb_005739_010 Hb_000630_040--Hb_005739_010 Hb_101832_010 Hb_101832_010 Hb_000630_040--Hb_101832_010 Hb_000316_050 Hb_000316_050 Hb_000630_040--Hb_000316_050 Hb_002900_140 Hb_002900_140 Hb_000630_040--Hb_002900_140 Hb_000931_010 Hb_000931_010 Hb_150379_010--Hb_000931_010 Hb_001009_300 Hb_001009_300 Hb_150379_010--Hb_001009_300 Hb_184403_020 Hb_184403_020 Hb_150379_010--Hb_184403_020 Hb_020000_010 Hb_020000_010 Hb_150379_010--Hb_020000_010 Hb_004800_120 Hb_004800_120 Hb_150379_010--Hb_004800_120 Hb_001019_040 Hb_001019_040 Hb_150379_010--Hb_001019_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.32989 0.40251 0.356093 0 0.784312 2.38995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.92153 1.27701 1.49569 0.936648 2.85067

CAGE analysis