Hb_000932_100

Information

Type -
Description -
Location Contig932: 117483-122328
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62866: 117224-117683 , PASA_asmbl_62867: 118853-119205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000932_100 0.0 - - -
2 Hb_005228_110 0.1987658436 - - Cleavage and polyadenylation specificity factor subunit 3 [Fukomys damarensis]
3 Hb_007426_160 0.200155654 - - -
4 Hb_020665_010 0.2077454653 - - PREDICTED: uncharacterized protein LOC103438977 isoform X2 [Malus domestica]
5 Hb_000062_140 0.2082263491 transcription factor TF Family: GRAS hypothetical protein JCGZ_17897 [Jatropha curcas]
6 Hb_002025_200 0.2092864069 - - -
7 Hb_003206_020 0.2122969577 - - PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X2 [Vitis vinifera]
8 Hb_010436_020 0.2139811647 - - Dicer-like protein 4 [Morus notabilis]
9 Hb_022092_090 0.2202822571 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
10 Hb_000012_460 0.2211958159 - - unknown [Populus trichocarpa]
11 Hb_002791_010 0.2259913739 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
12 Hb_007926_040 0.2261089133 - - sulfate transporter, putative [Ricinus communis]
13 Hb_168773_010 0.2274179911 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_006371_010 0.2280905049 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
15 Hb_000836_530 0.2281312566 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
16 Hb_001010_070 0.2297958716 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
17 Hb_002193_010 0.2301796794 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
18 Hb_001623_510 0.2301813284 - - transporter, putative [Ricinus communis]
19 Hb_002551_020 0.2304201317 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
20 Hb_000865_060 0.2319626802 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]

Gene co-expression network

sample Hb_000932_100 Hb_000932_100 Hb_005228_110 Hb_005228_110 Hb_000932_100--Hb_005228_110 Hb_007426_160 Hb_007426_160 Hb_000932_100--Hb_007426_160 Hb_020665_010 Hb_020665_010 Hb_000932_100--Hb_020665_010 Hb_000062_140 Hb_000062_140 Hb_000932_100--Hb_000062_140 Hb_002025_200 Hb_002025_200 Hb_000932_100--Hb_002025_200 Hb_003206_020 Hb_003206_020 Hb_000932_100--Hb_003206_020 Hb_028872_050 Hb_028872_050 Hb_005228_110--Hb_028872_050 Hb_000028_040 Hb_000028_040 Hb_005228_110--Hb_000028_040 Hb_002872_020 Hb_002872_020 Hb_005228_110--Hb_002872_020 Hb_001959_050 Hb_001959_050 Hb_005228_110--Hb_001959_050 Hb_034083_010 Hb_034083_010 Hb_005228_110--Hb_034083_010 Hb_000012_460 Hb_000012_460 Hb_007426_160--Hb_000012_460 Hb_001439_060 Hb_001439_060 Hb_007426_160--Hb_001439_060 Hb_000160_320 Hb_000160_320 Hb_007426_160--Hb_000160_320 Hb_000630_040 Hb_000630_040 Hb_007426_160--Hb_000630_040 Hb_150379_010 Hb_150379_010 Hb_007426_160--Hb_150379_010 Hb_145915_010 Hb_145915_010 Hb_020665_010--Hb_145915_010 Hb_009270_010 Hb_009270_010 Hb_020665_010--Hb_009270_010 Hb_007922_020 Hb_007922_020 Hb_020665_010--Hb_007922_020 Hb_001010_070 Hb_001010_070 Hb_020665_010--Hb_001010_070 Hb_007317_140 Hb_007317_140 Hb_020665_010--Hb_007317_140 Hb_001005_050 Hb_001005_050 Hb_020665_010--Hb_001005_050 Hb_003663_060 Hb_003663_060 Hb_000062_140--Hb_003663_060 Hb_153533_010 Hb_153533_010 Hb_000062_140--Hb_153533_010 Hb_000062_140--Hb_001439_060 Hb_011021_020 Hb_011021_020 Hb_000062_140--Hb_011021_020 Hb_000861_020 Hb_000861_020 Hb_000062_140--Hb_000861_020 Hb_000193_270 Hb_000193_270 Hb_000062_140--Hb_000193_270 Hb_002681_070 Hb_002681_070 Hb_002025_200--Hb_002681_070 Hb_002783_260 Hb_002783_260 Hb_002025_200--Hb_002783_260 Hb_002193_010 Hb_002193_010 Hb_002025_200--Hb_002193_010 Hb_000574_390 Hb_000574_390 Hb_002025_200--Hb_000574_390 Hb_012799_180 Hb_012799_180 Hb_002025_200--Hb_012799_180 Hb_001019_190 Hb_001019_190 Hb_002025_200--Hb_001019_190 Hb_003206_020--Hb_020665_010 Hb_007101_200 Hb_007101_200 Hb_003206_020--Hb_007101_200 Hb_003206_020--Hb_145915_010 Hb_003206_020--Hb_009270_010 Hb_000136_040 Hb_000136_040 Hb_003206_020--Hb_000136_040 Hb_002276_060 Hb_002276_060 Hb_003206_020--Hb_002276_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.109781 0.0244973 0.0376282 0 0.32792 0.439324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.22359 0.175839 0.321901 0.123996 0.446999

CAGE analysis