Hb_150379_010

Information

Type -
Description -
Location Contig150379: 21-1498
Sequence    

Annotation

kegg
ID pop:POPTR_0005s03770g
description RING zinc finger family protein
nr
ID XP_012089085.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
swissprot
ID Q80Z37
description E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1 SV=1
trembl
ID U5GAG3
description RING zinc finger family protein OS=Populus trichocarpa GN=POPTR_0005s03770g PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase topors

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150379_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
2 Hb_000931_010 0.1112035163 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001009_300 0.1531758702 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3-like [Gossypium raimondii]
4 Hb_184403_020 0.157286178 - - PREDICTED: pre-rRNA-processing protein ESF2 [Vitis vinifera]
5 Hb_020000_010 0.1574288294 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
6 Hb_004800_120 0.1624338465 - - PREDICTED: maf-like protein DDB_G0281937 isoform X1 [Jatropha curcas]
7 Hb_001019_040 0.1660632978 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
8 Hb_011671_220 0.1661631715 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005117_010 0.1695077094 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Jatropha curcas]
10 Hb_071130_030 0.1699620789 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
11 Hb_022092_090 0.1706246223 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
12 Hb_003623_050 0.1736332892 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001080_220 0.1743893645 - - TPA: hypothetical protein ZEAMMB73_966926 [Zea mays]
14 Hb_148209_080 0.1758716325 - - MED32, putative [Theobroma cacao]
15 Hb_001950_120 0.1762472242 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
16 Hb_024714_010 0.1769356494 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
17 Hb_001006_260 0.1782936808 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
18 Hb_022693_060 0.179039499 - - -
19 Hb_001117_090 0.1791046023 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
20 Hb_008554_070 0.1818319001 - - PREDICTED: peroxisome biogenesis protein 3-2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_150379_010 Hb_150379_010 Hb_000931_010 Hb_000931_010 Hb_150379_010--Hb_000931_010 Hb_001009_300 Hb_001009_300 Hb_150379_010--Hb_001009_300 Hb_184403_020 Hb_184403_020 Hb_150379_010--Hb_184403_020 Hb_020000_010 Hb_020000_010 Hb_150379_010--Hb_020000_010 Hb_004800_120 Hb_004800_120 Hb_150379_010--Hb_004800_120 Hb_001019_040 Hb_001019_040 Hb_150379_010--Hb_001019_040 Hb_001080_220 Hb_001080_220 Hb_000931_010--Hb_001080_220 Hb_000703_270 Hb_000703_270 Hb_000931_010--Hb_000703_270 Hb_000931_010--Hb_001009_300 Hb_000931_010--Hb_004800_120 Hb_003623_050 Hb_003623_050 Hb_000931_010--Hb_003623_050 Hb_000086_550 Hb_000086_550 Hb_001009_300--Hb_000086_550 Hb_005400_030 Hb_005400_030 Hb_001009_300--Hb_005400_030 Hb_001009_300--Hb_003623_050 Hb_001421_060 Hb_001421_060 Hb_001009_300--Hb_001421_060 Hb_005615_080 Hb_005615_080 Hb_001009_300--Hb_005615_080 Hb_001117_090 Hb_001117_090 Hb_001009_300--Hb_001117_090 Hb_071130_030 Hb_071130_030 Hb_184403_020--Hb_071130_030 Hb_184403_020--Hb_001117_090 Hb_003581_100 Hb_003581_100 Hb_184403_020--Hb_003581_100 Hb_000300_610 Hb_000300_610 Hb_184403_020--Hb_000300_610 Hb_001951_140 Hb_001951_140 Hb_184403_020--Hb_001951_140 Hb_002685_190 Hb_002685_190 Hb_184403_020--Hb_002685_190 Hb_024714_010 Hb_024714_010 Hb_020000_010--Hb_024714_010 Hb_024185_020 Hb_024185_020 Hb_020000_010--Hb_024185_020 Hb_008554_070 Hb_008554_070 Hb_020000_010--Hb_008554_070 Hb_001360_050 Hb_001360_050 Hb_020000_010--Hb_001360_050 Hb_011671_220 Hb_011671_220 Hb_020000_010--Hb_011671_220 Hb_002759_060 Hb_002759_060 Hb_020000_010--Hb_002759_060 Hb_002016_120 Hb_002016_120 Hb_004800_120--Hb_002016_120 Hb_004800_120--Hb_001117_090 Hb_005357_130 Hb_005357_130 Hb_004800_120--Hb_005357_130 Hb_004800_120--Hb_000086_550 Hb_006816_210 Hb_006816_210 Hb_004800_120--Hb_006816_210 Hb_004871_040 Hb_004871_040 Hb_004800_120--Hb_004871_040 Hb_001840_120 Hb_001840_120 Hb_001019_040--Hb_001840_120 Hb_001587_020 Hb_001587_020 Hb_001019_040--Hb_001587_020 Hb_000329_310 Hb_000329_310 Hb_001019_040--Hb_000329_310 Hb_001019_040--Hb_020000_010 Hb_001019_040--Hb_001117_090 Hb_000170_010 Hb_000170_010 Hb_001019_040--Hb_000170_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.506667 0.29129 0.139289 0.233415 0.700188 2.63175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.9763 2.43966 1.11996 1.1097 1.64696

CAGE analysis