Hb_001080_220

Information

Type -
Description -
Location Contig1080: 208617-211470
Sequence    

Annotation

kegg
ID csv:101221450
description 40S ribosomal protein S18-like
nr
ID DAA51878.1
description TPA: hypothetical protein ZEAMMB73_966926 [Zea mays]
swissprot
ID -
description -
trembl
ID A0A0E0D850
description Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1
Gene Ontology
ID GO:0030529
description 40s ribosomal protein s18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02429: 209750-210389 , PASA_asmbl_02430: 210637-211024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001080_220 0.0 - - TPA: hypothetical protein ZEAMMB73_966926 [Zea mays]
2 Hb_000931_010 0.1346147452 - - conserved hypothetical protein [Ricinus communis]
3 Hb_150379_010 0.1743893645 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
4 Hb_000486_010 0.1787093365 - - PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
5 Hb_004324_250 0.1811650942 - - PREDICTED: protein IWS1 homolog A isoform X1 [Jatropha curcas]
6 Hb_000703_270 0.1821412775 - - hypothetical protein B456_012G039600 [Gossypium raimondii]
7 Hb_003333_060 0.1849275276 - - PREDICTED: uncharacterized protein LOC105628461 [Jatropha curcas]
8 Hb_001019_040 0.186221531 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
9 Hb_015807_010 0.1873916201 - - hypothetical protein POPTR_0001s44430g [Populus trichocarpa]
10 Hb_001518_040 0.1899028325 - - PREDICTED: G patch domain-containing protein 11 [Populus euphratica]
11 Hb_022092_090 0.1919232682 - - PREDICTED: uncharacterized protein LOC105646975 [Jatropha curcas]
12 Hb_004724_190 0.1931766684 - - NITRILASE-LIKE protein 1 [Populus trichocarpa]
13 Hb_001009_300 0.1940476466 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3-like [Gossypium raimondii]
14 Hb_003682_060 0.1973598844 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
15 Hb_184403_020 0.1983429239 - - PREDICTED: pre-rRNA-processing protein ESF2 [Vitis vinifera]
16 Hb_002221_040 0.2011556536 - - PREDICTED: uncharacterized protein LOC105639851 [Jatropha curcas]
17 Hb_004097_050 0.2012954069 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
18 Hb_000111_420 0.2019866007 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Populus euphratica]
19 Hb_000015_210 0.2031969607 - - PREDICTED: uncharacterized protein LOC105647781 [Jatropha curcas]
20 Hb_001840_120 0.2041886663 - - PREDICTED: uncharacterized protein LOC104228746 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_001080_220 Hb_001080_220 Hb_000931_010 Hb_000931_010 Hb_001080_220--Hb_000931_010 Hb_150379_010 Hb_150379_010 Hb_001080_220--Hb_150379_010 Hb_000486_010 Hb_000486_010 Hb_001080_220--Hb_000486_010 Hb_004324_250 Hb_004324_250 Hb_001080_220--Hb_004324_250 Hb_000703_270 Hb_000703_270 Hb_001080_220--Hb_000703_270 Hb_003333_060 Hb_003333_060 Hb_001080_220--Hb_003333_060 Hb_000931_010--Hb_150379_010 Hb_000931_010--Hb_000703_270 Hb_001009_300 Hb_001009_300 Hb_000931_010--Hb_001009_300 Hb_004800_120 Hb_004800_120 Hb_000931_010--Hb_004800_120 Hb_003623_050 Hb_003623_050 Hb_000931_010--Hb_003623_050 Hb_150379_010--Hb_001009_300 Hb_184403_020 Hb_184403_020 Hb_150379_010--Hb_184403_020 Hb_020000_010 Hb_020000_010 Hb_150379_010--Hb_020000_010 Hb_150379_010--Hb_004800_120 Hb_001019_040 Hb_001019_040 Hb_150379_010--Hb_001019_040 Hb_000300_610 Hb_000300_610 Hb_000486_010--Hb_000300_610 Hb_063090_010 Hb_063090_010 Hb_000486_010--Hb_063090_010 Hb_005306_170 Hb_005306_170 Hb_000486_010--Hb_005306_170 Hb_000486_010--Hb_003333_060 Hb_000627_030 Hb_000627_030 Hb_000486_010--Hb_000627_030 Hb_000329_140 Hb_000329_140 Hb_000486_010--Hb_000329_140 Hb_002079_010 Hb_002079_010 Hb_004324_250--Hb_002079_010 Hb_001019_060 Hb_001019_060 Hb_004324_250--Hb_001019_060 Hb_007426_030 Hb_007426_030 Hb_004324_250--Hb_007426_030 Hb_000483_200 Hb_000483_200 Hb_004324_250--Hb_000483_200 Hb_006400_060 Hb_006400_060 Hb_004324_250--Hb_006400_060 Hb_010584_030 Hb_010584_030 Hb_004324_250--Hb_010584_030 Hb_000270_290 Hb_000270_290 Hb_000703_270--Hb_000270_290 Hb_000256_200 Hb_000256_200 Hb_000703_270--Hb_000256_200 Hb_032258_030 Hb_032258_030 Hb_000703_270--Hb_032258_030 Hb_002811_130 Hb_002811_130 Hb_000703_270--Hb_002811_130 Hb_000753_190 Hb_000753_190 Hb_000703_270--Hb_000753_190 Hb_008406_190 Hb_008406_190 Hb_003333_060--Hb_008406_190 Hb_000103_080 Hb_000103_080 Hb_003333_060--Hb_000103_080 Hb_010423_040 Hb_010423_040 Hb_003333_060--Hb_010423_040 Hb_000373_280 Hb_000373_280 Hb_003333_060--Hb_000373_280 Hb_003333_060--Hb_063090_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.385376 0.0362954 0.114793 0.064143 0.876462 1.2157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.742915 1.16804 0.34679 0.871841 0.640547

CAGE analysis