Hb_000256_200

Information

Type -
Description -
Location Contig256: 263976-273668
Sequence    

Annotation

kegg
ID rcu:RCOM_0922730
description hypothetical protein
nr
ID XP_002515468.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RNZ9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0922730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26703: 268368-273429
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000256_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000270_290 0.1207085306 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
3 Hb_001595_080 0.141891631 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000703_270 0.1551290157 - - hypothetical protein B456_012G039600 [Gossypium raimondii]
5 Hb_002188_120 0.1622736099 - - PREDICTED: thymocyte nuclear protein 1 [Pyrus x bretschneideri]
6 Hb_003747_060 0.1631490155 - - PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 isoform X2 [Cucumis sativus]
7 Hb_002481_060 0.1705834993 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
8 Hb_011021_020 0.1725987143 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
9 Hb_004303_040 0.1733346092 - - PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
10 Hb_000193_270 0.1759443362 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
11 Hb_025194_100 0.1761920774 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
12 Hb_153533_010 0.1765867721 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X3 [Jatropha curcas]
13 Hb_002811_010 0.1784876664 - - cysteine synthase, putative [Ricinus communis]
14 Hb_007973_010 0.1802657716 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
15 Hb_055619_010 0.1815372644 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
16 Hb_002811_130 0.1841106775 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
17 Hb_000062_140 0.1841635228 transcription factor TF Family: GRAS hypothetical protein JCGZ_17897 [Jatropha curcas]
18 Hb_000289_110 0.1863446449 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
19 Hb_001119_060 0.1873020858 - - PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X3 [Malus domestica]
20 Hb_001546_060 0.1898469675 - - PREDICTED: uncharacterized protein LOC105133943 isoform X4 [Populus euphratica]

Gene co-expression network

sample Hb_000256_200 Hb_000256_200 Hb_000270_290 Hb_000270_290 Hb_000256_200--Hb_000270_290 Hb_001595_080 Hb_001595_080 Hb_000256_200--Hb_001595_080 Hb_000703_270 Hb_000703_270 Hb_000256_200--Hb_000703_270 Hb_002188_120 Hb_002188_120 Hb_000256_200--Hb_002188_120 Hb_003747_060 Hb_003747_060 Hb_000256_200--Hb_003747_060 Hb_002481_060 Hb_002481_060 Hb_000256_200--Hb_002481_060 Hb_002811_130 Hb_002811_130 Hb_000270_290--Hb_002811_130 Hb_017987_030 Hb_017987_030 Hb_000270_290--Hb_017987_030 Hb_000074_080 Hb_000074_080 Hb_000270_290--Hb_000074_080 Hb_011021_020 Hb_011021_020 Hb_000270_290--Hb_011021_020 Hb_001579_270 Hb_001579_270 Hb_000270_290--Hb_001579_270 Hb_002518_120 Hb_002518_120 Hb_001595_080--Hb_002518_120 Hb_032920_050 Hb_032920_050 Hb_001595_080--Hb_032920_050 Hb_003994_110 Hb_003994_110 Hb_001595_080--Hb_003994_110 Hb_002304_070 Hb_002304_070 Hb_001595_080--Hb_002304_070 Hb_001951_180 Hb_001951_180 Hb_001595_080--Hb_001951_180 Hb_000703_270--Hb_000270_290 Hb_000931_010 Hb_000931_010 Hb_000703_270--Hb_000931_010 Hb_032258_030 Hb_032258_030 Hb_000703_270--Hb_032258_030 Hb_000703_270--Hb_002811_130 Hb_000753_190 Hb_000753_190 Hb_000703_270--Hb_000753_190 Hb_000111_420 Hb_000111_420 Hb_002188_120--Hb_000111_420 Hb_007922_020 Hb_007922_020 Hb_002188_120--Hb_007922_020 Hb_001546_060 Hb_001546_060 Hb_002188_120--Hb_001546_060 Hb_000631_080 Hb_000631_080 Hb_002188_120--Hb_000631_080 Hb_001369_750 Hb_001369_750 Hb_002188_120--Hb_001369_750 Hb_009658_020 Hb_009658_020 Hb_002188_120--Hb_009658_020 Hb_002260_150 Hb_002260_150 Hb_003747_060--Hb_002260_150 Hb_002811_030 Hb_002811_030 Hb_003747_060--Hb_002811_030 Hb_011794_080 Hb_011794_080 Hb_003747_060--Hb_011794_080 Hb_001119_060 Hb_001119_060 Hb_003747_060--Hb_001119_060 Hb_008406_190 Hb_008406_190 Hb_003747_060--Hb_008406_190 Hb_010423_040 Hb_010423_040 Hb_003747_060--Hb_010423_040 Hb_006683_070 Hb_006683_070 Hb_002481_060--Hb_006683_070 Hb_025098_010 Hb_025098_010 Hb_002481_060--Hb_025098_010 Hb_185255_010 Hb_185255_010 Hb_002481_060--Hb_185255_010 Hb_000684_210 Hb_000684_210 Hb_002481_060--Hb_000684_210 Hb_000525_090 Hb_000525_090 Hb_002481_060--Hb_000525_090 Hb_000179_270 Hb_000179_270 Hb_002481_060--Hb_000179_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0294668 0.0261414 0.0607824 0.127252 0.140497 0.201488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.239361 0.164776 0.0442876 0.140869 0.295925

CAGE analysis