Hb_000270_290

Information

Type -
Description -
Location Contig270: 231548-233780
Sequence    

Annotation

kegg
ID rcu:RCOM_1512940
description 5-formyltetrahydrofolate cyclo-ligase, putative (EC:6.3.3.2)
nr
ID XP_002511485.1
description 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
swissprot
ID Q8L539
description 5-formyltetrahydrofolate cyclo-ligase, mitochondrial OS=Arabidopsis thaliana GN=5FCL PE=1 SV=1
trembl
ID B9R910
description 5-formyltetrahydrofolate cyclo-ligase OS=Ricinus communis GN=RCOM_1512940 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28185: 231593-232197
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_290 0.0 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
2 Hb_002811_130 0.114193304 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
3 Hb_000256_200 0.1207085306 - - conserved hypothetical protein [Ricinus communis]
4 Hb_017987_030 0.1207250238 - - PREDICTED: uncharacterized protein LOC105630796 [Jatropha curcas]
5 Hb_000074_080 0.1233312918 - - unknown [Populus trichocarpa]
6 Hb_011021_020 0.1235814832 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
7 Hb_001579_270 0.123703767 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
8 Hb_001119_060 0.1260661332 - - PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X3 [Malus domestica]
9 Hb_000193_270 0.1266375581 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
10 Hb_087749_010 0.1275832676 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
11 Hb_004330_090 0.1296119301 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
12 Hb_005847_060 0.1305006896 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
13 Hb_111722_010 0.1316133595 - - PREDICTED: uncharacterized protein LOC105634044 isoform X2 [Jatropha curcas]
14 Hb_021576_030 0.1325344814 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
15 Hb_000703_270 0.1341787987 - - hypothetical protein B456_012G039600 [Gossypium raimondii]
16 Hb_000103_080 0.1358583933 - - PREDICTED: ATP-dependent RNA helicase SUV3, mitochondrial [Jatropha curcas]
17 Hb_000599_300 0.1395326064 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
18 Hb_000289_110 0.1402889267 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
19 Hb_000479_250 0.1404398328 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
20 Hb_002496_020 0.1410888427 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000270_290 Hb_000270_290 Hb_002811_130 Hb_002811_130 Hb_000270_290--Hb_002811_130 Hb_000256_200 Hb_000256_200 Hb_000270_290--Hb_000256_200 Hb_017987_030 Hb_017987_030 Hb_000270_290--Hb_017987_030 Hb_000074_080 Hb_000074_080 Hb_000270_290--Hb_000074_080 Hb_011021_020 Hb_011021_020 Hb_000270_290--Hb_011021_020 Hb_001579_270 Hb_001579_270 Hb_000270_290--Hb_001579_270 Hb_000289_110 Hb_000289_110 Hb_002811_130--Hb_000289_110 Hb_011716_130 Hb_011716_130 Hb_002811_130--Hb_011716_130 Hb_002014_030 Hb_002014_030 Hb_002811_130--Hb_002014_030 Hb_005847_060 Hb_005847_060 Hb_002811_130--Hb_005847_060 Hb_006274_030 Hb_006274_030 Hb_002811_130--Hb_006274_030 Hb_000061_210 Hb_000061_210 Hb_002811_130--Hb_000061_210 Hb_001595_080 Hb_001595_080 Hb_000256_200--Hb_001595_080 Hb_000703_270 Hb_000703_270 Hb_000256_200--Hb_000703_270 Hb_002188_120 Hb_002188_120 Hb_000256_200--Hb_002188_120 Hb_003747_060 Hb_003747_060 Hb_000256_200--Hb_003747_060 Hb_002481_060 Hb_002481_060 Hb_000256_200--Hb_002481_060 Hb_017987_030--Hb_002014_030 Hb_012055_030 Hb_012055_030 Hb_017987_030--Hb_012055_030 Hb_007192_070 Hb_007192_070 Hb_017987_030--Hb_007192_070 Hb_000110_250 Hb_000110_250 Hb_017987_030--Hb_000110_250 Hb_000840_200 Hb_000840_200 Hb_017987_030--Hb_000840_200 Hb_000075_040 Hb_000075_040 Hb_017987_030--Hb_000075_040 Hb_001247_310 Hb_001247_310 Hb_000074_080--Hb_001247_310 Hb_001119_060 Hb_001119_060 Hb_000074_080--Hb_001119_060 Hb_000181_130 Hb_000181_130 Hb_000074_080--Hb_000181_130 Hb_009328_020 Hb_009328_020 Hb_000074_080--Hb_009328_020 Hb_000074_080--Hb_007192_070 Hb_000915_260 Hb_000915_260 Hb_000074_080--Hb_000915_260 Hb_002496_020 Hb_002496_020 Hb_011021_020--Hb_002496_020 Hb_011021_020--Hb_005847_060 Hb_000959_030 Hb_000959_030 Hb_011021_020--Hb_000959_030 Hb_004191_020 Hb_004191_020 Hb_011021_020--Hb_004191_020 Hb_000193_270 Hb_000193_270 Hb_011021_020--Hb_000193_270 Hb_000224_160 Hb_000224_160 Hb_011021_020--Hb_000224_160 Hb_007672_060 Hb_007672_060 Hb_001579_270--Hb_007672_060 Hb_000599_300 Hb_000599_300 Hb_001579_270--Hb_000599_300 Hb_000054_090 Hb_000054_090 Hb_001579_270--Hb_000054_090 Hb_054865_120 Hb_054865_120 Hb_001579_270--Hb_054865_120 Hb_033594_120 Hb_033594_120 Hb_001579_270--Hb_033594_120 Hb_003633_030 Hb_003633_030 Hb_001579_270--Hb_003633_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27104 0.430243 1.48637 2.09755 2.09914 3.37165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.94885 3.70999 0.933954 1.83397 3.83548

CAGE analysis