Hb_000703_270

Information

Type -
Description -
Location Contig703: 271538-279860
Sequence    

Annotation

kegg
ID tcc:TCM_027047
description hypothetical protein
nr
ID KJB75393.1
description hypothetical protein B456_012G039600 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2TI49
description Gossypium raimondii chromosome 12, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_012G039600 PE=4 SV=1
Gene Ontology
ID GO:0016301
description n-acetyl-d-glucosamine kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54959: 277640-277843 , PASA_asmbl_54960: 278079-278420
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_270 0.0 - - hypothetical protein B456_012G039600 [Gossypium raimondii]
2 Hb_000270_290 0.1341787987 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
3 Hb_000931_010 0.1436832714 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000256_200 0.1551290157 - - conserved hypothetical protein [Ricinus communis]
5 Hb_032258_030 0.1676602875 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
6 Hb_002811_130 0.1697086919 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
7 Hb_000753_190 0.1707233897 - - PREDICTED: D-aminoacyl-tRNA deacylase [Populus euphratica]
8 Hb_004097_050 0.1748154284 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
9 Hb_021576_030 0.1754117254 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
10 Hb_004800_120 0.1771366866 - - PREDICTED: maf-like protein DDB_G0281937 isoform X1 [Jatropha curcas]
11 Hb_003747_060 0.1799474195 - - PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 isoform X2 [Cucumis sativus]
12 Hb_035273_010 0.1813610552 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
13 Hb_001080_220 0.1821412775 - - TPA: hypothetical protein ZEAMMB73_966926 [Zea mays]
14 Hb_004871_040 0.1826452795 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase [Jatropha curcas]
15 Hb_150379_010 0.1830175717 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
16 Hb_000159_130 0.1831326071 - - RNA binding protein, putative [Ricinus communis]
17 Hb_105123_010 0.1833330017 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
18 Hb_001595_080 0.1833843539 - - conserved hypothetical protein [Ricinus communis]
19 Hb_087749_010 0.183550784 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
20 Hb_017987_030 0.1864904378 - - PREDICTED: uncharacterized protein LOC105630796 [Jatropha curcas]

Gene co-expression network

sample Hb_000703_270 Hb_000703_270 Hb_000270_290 Hb_000270_290 Hb_000703_270--Hb_000270_290 Hb_000931_010 Hb_000931_010 Hb_000703_270--Hb_000931_010 Hb_000256_200 Hb_000256_200 Hb_000703_270--Hb_000256_200 Hb_032258_030 Hb_032258_030 Hb_000703_270--Hb_032258_030 Hb_002811_130 Hb_002811_130 Hb_000703_270--Hb_002811_130 Hb_000753_190 Hb_000753_190 Hb_000703_270--Hb_000753_190 Hb_000270_290--Hb_002811_130 Hb_000270_290--Hb_000256_200 Hb_017987_030 Hb_017987_030 Hb_000270_290--Hb_017987_030 Hb_000074_080 Hb_000074_080 Hb_000270_290--Hb_000074_080 Hb_011021_020 Hb_011021_020 Hb_000270_290--Hb_011021_020 Hb_001579_270 Hb_001579_270 Hb_000270_290--Hb_001579_270 Hb_150379_010 Hb_150379_010 Hb_000931_010--Hb_150379_010 Hb_001080_220 Hb_001080_220 Hb_000931_010--Hb_001080_220 Hb_001009_300 Hb_001009_300 Hb_000931_010--Hb_001009_300 Hb_004800_120 Hb_004800_120 Hb_000931_010--Hb_004800_120 Hb_003623_050 Hb_003623_050 Hb_000931_010--Hb_003623_050 Hb_001595_080 Hb_001595_080 Hb_000256_200--Hb_001595_080 Hb_002188_120 Hb_002188_120 Hb_000256_200--Hb_002188_120 Hb_003747_060 Hb_003747_060 Hb_000256_200--Hb_003747_060 Hb_002481_060 Hb_002481_060 Hb_000256_200--Hb_002481_060 Hb_155159_030 Hb_155159_030 Hb_032258_030--Hb_155159_030 Hb_008648_010 Hb_008648_010 Hb_032258_030--Hb_008648_010 Hb_105123_010 Hb_105123_010 Hb_032258_030--Hb_105123_010 Hb_004097_050 Hb_004097_050 Hb_032258_030--Hb_004097_050 Hb_009658_020 Hb_009658_020 Hb_032258_030--Hb_009658_020 Hb_005306_170 Hb_005306_170 Hb_032258_030--Hb_005306_170 Hb_000289_110 Hb_000289_110 Hb_002811_130--Hb_000289_110 Hb_011716_130 Hb_011716_130 Hb_002811_130--Hb_011716_130 Hb_002014_030 Hb_002014_030 Hb_002811_130--Hb_002014_030 Hb_005847_060 Hb_005847_060 Hb_002811_130--Hb_005847_060 Hb_006274_030 Hb_006274_030 Hb_002811_130--Hb_006274_030 Hb_000061_210 Hb_000061_210 Hb_002811_130--Hb_000061_210 Hb_023711_010 Hb_023711_010 Hb_000753_190--Hb_023711_010 Hb_003638_070 Hb_003638_070 Hb_000753_190--Hb_003638_070 Hb_007290_080 Hb_007290_080 Hb_000753_190--Hb_007290_080 Hb_000010_260 Hb_000010_260 Hb_000753_190--Hb_000010_260 Hb_000329_020 Hb_000329_020 Hb_000753_190--Hb_000329_020 Hb_001387_020 Hb_001387_020 Hb_000753_190--Hb_001387_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0859589 0.0317962 0.0873391 0.0639966 0.149614 0.25066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.26225 0.37818 0.0637449 0.248199 0.354476

CAGE analysis