Hb_004324_250

Information

Type -
Description -
Location Contig4324: 154799-159646
Sequence    

Annotation

kegg
ID rcu:RCOM_1580580
description hypothetical protein
nr
ID XP_012090118.1
description PREDICTED: protein IWS1 homolog A isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26006 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42324: 154871-155695 , PASA_asmbl_42325: 155882-157037 , PASA_asmbl_42326: 157052-159154
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_250 0.0 - - PREDICTED: protein IWS1 homolog A isoform X1 [Jatropha curcas]
2 Hb_002079_010 0.1016380425 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
3 Hb_001019_060 0.1017253372 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
4 Hb_007426_030 0.1039616365 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
5 Hb_000483_200 0.109601569 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
6 Hb_006400_060 0.1129112633 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
7 Hb_010584_030 0.113757657 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
8 Hb_010436_020 0.1192480152 - - Dicer-like protein 4 [Morus notabilis]
9 Hb_001720_050 0.1192530716 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
10 Hb_000123_260 0.1194051724 - - PREDICTED: protein gar2 [Jatropha curcas]
11 Hb_001771_090 0.1198599719 - - PREDICTED: uncharacterized protein LOC105634551 [Jatropha curcas]
12 Hb_003893_010 0.120057872 - - hypothetical protein M569_16374 [Genlisea aurea]
13 Hb_001500_040 0.1201809402 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
14 Hb_000103_180 0.1205409176 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
15 Hb_004600_040 0.1217299971 - - -
16 Hb_001959_210 0.1219388389 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
17 Hb_015001_020 0.1236678824 - - PREDICTED: la-related protein 6B [Jatropha curcas]
18 Hb_002551_020 0.1250934414 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
19 Hb_003506_080 0.1258747606 - - dipeptidyl peptidase IV, putative [Ricinus communis]
20 Hb_000115_330 0.1264351994 - - altered response to gravity (arg1), plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_004324_250 Hb_004324_250 Hb_002079_010 Hb_002079_010 Hb_004324_250--Hb_002079_010 Hb_001019_060 Hb_001019_060 Hb_004324_250--Hb_001019_060 Hb_007426_030 Hb_007426_030 Hb_004324_250--Hb_007426_030 Hb_000483_200 Hb_000483_200 Hb_004324_250--Hb_000483_200 Hb_006400_060 Hb_006400_060 Hb_004324_250--Hb_006400_060 Hb_010584_030 Hb_010584_030 Hb_004324_250--Hb_010584_030 Hb_000103_180 Hb_000103_180 Hb_002079_010--Hb_000103_180 Hb_002030_030 Hb_002030_030 Hb_002079_010--Hb_002030_030 Hb_002079_010--Hb_007426_030 Hb_002079_010--Hb_006400_060 Hb_063090_010 Hb_063090_010 Hb_002079_010--Hb_063090_010 Hb_000179_020 Hb_000179_020 Hb_002079_010--Hb_000179_020 Hb_001019_060--Hb_007426_030 Hb_001019_060--Hb_000103_180 Hb_000538_200 Hb_000538_200 Hb_001019_060--Hb_000538_200 Hb_001019_060--Hb_002079_010 Hb_005489_110 Hb_005489_110 Hb_001019_060--Hb_005489_110 Hb_000808_230 Hb_000808_230 Hb_001019_060--Hb_000808_230 Hb_007426_030--Hb_000103_180 Hb_007426_030--Hb_000808_230 Hb_007426_030--Hb_000483_200 Hb_007426_030--Hb_006400_060 Hb_000483_200--Hb_006400_060 Hb_006400_030 Hb_006400_030 Hb_000483_200--Hb_006400_030 Hb_003032_040 Hb_003032_040 Hb_000483_200--Hb_003032_040 Hb_002016_110 Hb_002016_110 Hb_000483_200--Hb_002016_110 Hb_001959_210 Hb_001959_210 Hb_000483_200--Hb_001959_210 Hb_006400_060--Hb_000808_230 Hb_006400_060--Hb_003032_040 Hb_006400_060--Hb_002016_110 Hb_006400_060--Hb_006400_030 Hb_002835_410 Hb_002835_410 Hb_010584_030--Hb_002835_410 Hb_001135_160 Hb_001135_160 Hb_010584_030--Hb_001135_160 Hb_000556_080 Hb_000556_080 Hb_010584_030--Hb_000556_080 Hb_001604_010 Hb_001604_010 Hb_010584_030--Hb_001604_010 Hb_060809_010 Hb_060809_010 Hb_010584_030--Hb_060809_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0071 4.55936 3.7692 2.57289 22.8275 25.3095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5582 18.6562 21.5082 16.8528 8.50131

CAGE analysis