Hb_002025_200

Information

Type -
Description -
Location Contig2025: 132012-133531
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20578: 131950-132256
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_200 0.0 - - -
2 Hb_002681_070 0.0860777233 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
3 Hb_002783_260 0.1111784085 - - hypothetical protein JCGZ_08219 [Jatropha curcas]
4 Hb_002193_010 0.1167684317 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
5 Hb_000574_390 0.1172580227 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
6 Hb_012799_180 0.1196856402 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Vitis vinifera]
7 Hb_001019_190 0.1201102397 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007632_220 0.1228246631 - - RNA-binding protein, putative [Ricinus communis]
9 Hb_002276_060 0.1233696589 - - hypothetical protein CISIN_1g002019mg [Citrus sinensis]
10 Hb_000034_040 0.1238640045 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
11 Hb_002527_030 0.1239909028 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]
12 Hb_005396_130 0.125398039 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
13 Hb_003786_020 0.1268508407 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
14 Hb_000538_200 0.1270648873 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
15 Hb_003001_150 0.1275861309 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_012799_030 0.1278240798 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
17 Hb_000631_080 0.1295171146 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Jatropha curcas]
18 Hb_000317_020 0.1301955764 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
19 Hb_006915_070 0.1325794689 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
20 Hb_002686_290 0.1328197172 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Populus euphratica]

Gene co-expression network

sample Hb_002025_200 Hb_002025_200 Hb_002681_070 Hb_002681_070 Hb_002025_200--Hb_002681_070 Hb_002783_260 Hb_002783_260 Hb_002025_200--Hb_002783_260 Hb_002193_010 Hb_002193_010 Hb_002025_200--Hb_002193_010 Hb_000574_390 Hb_000574_390 Hb_002025_200--Hb_000574_390 Hb_012799_180 Hb_012799_180 Hb_002025_200--Hb_012799_180 Hb_001019_190 Hb_001019_190 Hb_002025_200--Hb_001019_190 Hb_008785_040 Hb_008785_040 Hb_002681_070--Hb_008785_040 Hb_006915_070 Hb_006915_070 Hb_002681_070--Hb_006915_070 Hb_002681_070--Hb_001019_190 Hb_000034_040 Hb_000034_040 Hb_002681_070--Hb_000034_040 Hb_000819_080 Hb_000819_080 Hb_002681_070--Hb_000819_080 Hb_005496_130 Hb_005496_130 Hb_002681_070--Hb_005496_130 Hb_011673_030 Hb_011673_030 Hb_002783_260--Hb_011673_030 Hb_001507_020 Hb_001507_020 Hb_002783_260--Hb_001507_020 Hb_000538_200 Hb_000538_200 Hb_002783_260--Hb_000538_200 Hb_003938_080 Hb_003938_080 Hb_002783_260--Hb_003938_080 Hb_001245_070 Hb_001245_070 Hb_002783_260--Hb_001245_070 Hb_001736_040 Hb_001736_040 Hb_002783_260--Hb_001736_040 Hb_002276_060 Hb_002276_060 Hb_002193_010--Hb_002276_060 Hb_012286_010 Hb_012286_010 Hb_002193_010--Hb_012286_010 Hb_000170_190 Hb_000170_190 Hb_002193_010--Hb_000170_190 Hb_003406_040 Hb_003406_040 Hb_002193_010--Hb_003406_040 Hb_003001_150 Hb_003001_150 Hb_002193_010--Hb_003001_150 Hb_000729_050 Hb_000729_050 Hb_002193_010--Hb_000729_050 Hb_013405_030 Hb_013405_030 Hb_000574_390--Hb_013405_030 Hb_015198_020 Hb_015198_020 Hb_000574_390--Hb_015198_020 Hb_000631_080 Hb_000631_080 Hb_000574_390--Hb_000631_080 Hb_086639_040 Hb_086639_040 Hb_000574_390--Hb_086639_040 Hb_011242_040 Hb_011242_040 Hb_000574_390--Hb_011242_040 Hb_000707_050 Hb_000707_050 Hb_000574_390--Hb_000707_050 Hb_001703_030 Hb_001703_030 Hb_012799_180--Hb_001703_030 Hb_085781_010 Hb_085781_010 Hb_012799_180--Hb_085781_010 Hb_011867_010 Hb_011867_010 Hb_012799_180--Hb_011867_010 Hb_008554_030 Hb_008554_030 Hb_012799_180--Hb_008554_030 Hb_017904_010 Hb_017904_010 Hb_012799_180--Hb_017904_010 Hb_001776_140 Hb_001776_140 Hb_012799_180--Hb_001776_140 Hb_001019_190--Hb_000819_080 Hb_024570_010 Hb_024570_010 Hb_001019_190--Hb_024570_010 Hb_000739_310 Hb_000739_310 Hb_001019_190--Hb_000739_310 Hb_000173_290 Hb_000173_290 Hb_001019_190--Hb_000173_290 Hb_000796_220 Hb_000796_220 Hb_001019_190--Hb_000796_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.18685 0.818677 0.38915 0.472853 2.78777 2.49798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35251 1.77132 2.29705 0.729839 2.53921

CAGE analysis