Hb_085781_010

Information

Type -
Description -
Location Contig85781: 1-810
Sequence    

Annotation

kegg
ID rcu:RCOM_0603600
description mRNA, complete cds, clone: rafl24-09-C04, putative
nr
ID XP_012079135.1
description PREDICTED: protein root UVB sensitive 4 [Jatropha curcas]
swissprot
ID Q67YT8
description Protein root UVB sensitive 4 OS=Arabidopsis thaliana GN=RUS4 PE=2 SV=1
trembl
ID B9S8Q2
description mRNA, clone: rafl24-09-C04, putative OS=Ricinus communis GN=RCOM_0603600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60661: 827-1040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085781_010 0.0 - - PREDICTED: protein root UVB sensitive 4 [Jatropha curcas]
2 Hb_000796_220 0.0794681493 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
3 Hb_012799_180 0.0835551754 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Vitis vinifera]
4 Hb_007632_220 0.0847403224 - - RNA-binding protein, putative [Ricinus communis]
5 Hb_007951_050 0.086518992 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_009048_040 0.0896005618 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
7 Hb_011673_030 0.09321509 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
8 Hb_004109_090 0.0932539264 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_001703_030 0.094366764 transcription factor TF Family: SET Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]
10 Hb_000421_260 0.0951147384 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
11 Hb_011571_010 0.0959136419 - - Metal tolerance protein C4, putative [Ricinus communis]
12 Hb_000808_230 0.0960069102 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
13 Hb_004600_040 0.0971851143 - - -
14 Hb_000170_210 0.0977172121 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_006472_010 0.0993443791 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
16 Hb_000069_110 0.0993665426 - - PREDICTED: nephrocystin-3-like isoform X2 [Jatropha curcas]
17 Hb_008085_030 0.1002403512 - - PREDICTED: uncharacterized protein LOC105639414 [Jatropha curcas]
18 Hb_007317_210 0.1013394586 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
19 Hb_001545_120 0.1019784913 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
20 Hb_002496_030 0.1024091236 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_085781_010 Hb_085781_010 Hb_000796_220 Hb_000796_220 Hb_085781_010--Hb_000796_220 Hb_012799_180 Hb_012799_180 Hb_085781_010--Hb_012799_180 Hb_007632_220 Hb_007632_220 Hb_085781_010--Hb_007632_220 Hb_007951_050 Hb_007951_050 Hb_085781_010--Hb_007951_050 Hb_009048_040 Hb_009048_040 Hb_085781_010--Hb_009048_040 Hb_011673_030 Hb_011673_030 Hb_085781_010--Hb_011673_030 Hb_000808_230 Hb_000808_230 Hb_000796_220--Hb_000808_230 Hb_004109_090 Hb_004109_090 Hb_000796_220--Hb_004109_090 Hb_000170_210 Hb_000170_210 Hb_000796_220--Hb_000170_210 Hb_001675_180 Hb_001675_180 Hb_000796_220--Hb_001675_180 Hb_000832_020 Hb_000832_020 Hb_000796_220--Hb_000832_020 Hb_001703_030 Hb_001703_030 Hb_012799_180--Hb_001703_030 Hb_011867_010 Hb_011867_010 Hb_012799_180--Hb_011867_010 Hb_008554_030 Hb_008554_030 Hb_012799_180--Hb_008554_030 Hb_017904_010 Hb_017904_010 Hb_012799_180--Hb_017904_010 Hb_001776_140 Hb_001776_140 Hb_012799_180--Hb_001776_140 Hb_000047_030 Hb_000047_030 Hb_007632_220--Hb_000047_030 Hb_000574_390 Hb_000574_390 Hb_007632_220--Hb_000574_390 Hb_013405_030 Hb_013405_030 Hb_007632_220--Hb_013405_030 Hb_002686_290 Hb_002686_290 Hb_007632_220--Hb_002686_290 Hb_015198_020 Hb_015198_020 Hb_007632_220--Hb_015198_020 Hb_000421_260 Hb_000421_260 Hb_007951_050--Hb_000421_260 Hb_000754_060 Hb_000754_060 Hb_007951_050--Hb_000754_060 Hb_002496_030 Hb_002496_030 Hb_007951_050--Hb_002496_030 Hb_001159_100 Hb_001159_100 Hb_007951_050--Hb_001159_100 Hb_015306_020 Hb_015306_020 Hb_007951_050--Hb_015306_020 Hb_028872_140 Hb_028872_140 Hb_007951_050--Hb_028872_140 Hb_005754_060 Hb_005754_060 Hb_009048_040--Hb_005754_060 Hb_009048_040--Hb_004109_090 Hb_003195_070 Hb_003195_070 Hb_009048_040--Hb_003195_070 Hb_005489_110 Hb_005489_110 Hb_009048_040--Hb_005489_110 Hb_000080_190 Hb_000080_190 Hb_009048_040--Hb_000080_190 Hb_002506_020 Hb_002506_020 Hb_009048_040--Hb_002506_020 Hb_000815_210 Hb_000815_210 Hb_011673_030--Hb_000815_210 Hb_003464_060 Hb_003464_060 Hb_011673_030--Hb_003464_060 Hb_001545_120 Hb_001545_120 Hb_011673_030--Hb_001545_120 Hb_001006_140 Hb_001006_140 Hb_011673_030--Hb_001006_140 Hb_002783_260 Hb_002783_260 Hb_011673_030--Hb_002783_260 Hb_003406_010 Hb_003406_010 Hb_011673_030--Hb_003406_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7851 7.88464 8.81386 4.76501 23.4344 25.2891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.2294 21.5228 30.5466 8.87142 12.4484

CAGE analysis