Hb_000772_040

Information

Type -
Description -
Location Contig772: 115169-115720
Sequence    

Annotation

kegg
ID bvg:104907794
description uncharacterized LOC104907794
nr
ID XP_010910339.1
description PREDICTED: uncharacterized protein LOC105036273 [Elaeis guineensis]
swissprot
ID -
description -
trembl
ID U5CWU0
description Uncharacterized protein (Fragment) OS=Amborella trichopoda GN=AMTR_s05090p00005430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000772_040 0.0 - - PREDICTED: uncharacterized protein LOC105036273 [Elaeis guineensis]
2 Hb_000399_010 0.1962057578 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
3 Hb_000012_460 0.2122744295 - - unknown [Populus trichocarpa]
4 Hb_001703_120 0.2344909207 - - PREDICTED: uncharacterized protein LOC105116966 isoform X2 [Populus euphratica]
5 Hb_000865_060 0.2424219003 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]
6 Hb_001294_010 0.2436563047 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
7 Hb_000160_320 0.2479446121 - - hypothetical protein POPTR_0004s08730g [Populus trichocarpa]
8 Hb_003786_020 0.2498159428 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
9 Hb_086077_020 0.2513131142 - - hypothetical protein PHAVU_001G054900g [Phaseolus vulgaris]
10 Hb_000932_100 0.2514732353 - - -
11 Hb_000684_440 0.25234947 - - hypothetical protein CICLE_v100111082mg, partial [Citrus clementina]
12 Hb_101808_010 0.2533414233 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
13 Hb_000154_010 0.2533488336 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_011242_040 0.2536506666 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
15 Hb_007416_270 0.2571648617 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
16 Hb_172154_010 0.2578756648 - - hypothetical protein JCGZ_25247 [Jatropha curcas]
17 Hb_000189_140 0.2595795376 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_020334_010 0.259937353 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_011484_010 0.2614431577 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_001090_050 0.2632650473 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000772_040 Hb_000772_040 Hb_000399_010 Hb_000399_010 Hb_000772_040--Hb_000399_010 Hb_000012_460 Hb_000012_460 Hb_000772_040--Hb_000012_460 Hb_001703_120 Hb_001703_120 Hb_000772_040--Hb_001703_120 Hb_000865_060 Hb_000865_060 Hb_000772_040--Hb_000865_060 Hb_001294_010 Hb_001294_010 Hb_000772_040--Hb_001294_010 Hb_000160_320 Hb_000160_320 Hb_000772_040--Hb_000160_320 Hb_011484_010 Hb_011484_010 Hb_000399_010--Hb_011484_010 Hb_000283_080 Hb_000283_080 Hb_000399_010--Hb_000283_080 Hb_036311_020 Hb_036311_020 Hb_000399_010--Hb_036311_020 Hb_003906_090 Hb_003906_090 Hb_000399_010--Hb_003906_090 Hb_001523_020 Hb_001523_020 Hb_000399_010--Hb_001523_020 Hb_007426_160 Hb_007426_160 Hb_000012_460--Hb_007426_160 Hb_086077_020 Hb_086077_020 Hb_000012_460--Hb_086077_020 Hb_000932_100 Hb_000932_100 Hb_000012_460--Hb_000932_100 Hb_001006_260 Hb_001006_260 Hb_000012_460--Hb_001006_260 Hb_004448_020 Hb_004448_020 Hb_000012_460--Hb_004448_020 Hb_003861_020 Hb_003861_020 Hb_001703_120--Hb_003861_020 Hb_174473_010 Hb_174473_010 Hb_001703_120--Hb_174473_010 Hb_073452_010 Hb_073452_010 Hb_001703_120--Hb_073452_010 Hb_027402_140 Hb_027402_140 Hb_001703_120--Hb_027402_140 Hb_000193_310 Hb_000193_310 Hb_001703_120--Hb_000193_310 Hb_000684_440 Hb_000684_440 Hb_001703_120--Hb_000684_440 Hb_007416_270 Hb_007416_270 Hb_000865_060--Hb_007416_270 Hb_001090_050 Hb_001090_050 Hb_000865_060--Hb_001090_050 Hb_001002_030 Hb_001002_030 Hb_000865_060--Hb_001002_030 Hb_005188_090 Hb_005188_090 Hb_000865_060--Hb_005188_090 Hb_011242_040 Hb_011242_040 Hb_000865_060--Hb_011242_040 Hb_168773_010 Hb_168773_010 Hb_000865_060--Hb_168773_010 Hb_092107_010 Hb_092107_010 Hb_001294_010--Hb_092107_010 Hb_001014_230 Hb_001014_230 Hb_001294_010--Hb_001014_230 Hb_001357_010 Hb_001357_010 Hb_001294_010--Hb_001357_010 Hb_003294_100 Hb_003294_100 Hb_001294_010--Hb_003294_100 Hb_002307_170 Hb_002307_170 Hb_001294_010--Hb_002307_170 Hb_004056_030 Hb_004056_030 Hb_001294_010--Hb_004056_030 Hb_000160_320--Hb_000283_080 Hb_007747_210 Hb_007747_210 Hb_000160_320--Hb_007747_210 Hb_003734_110 Hb_003734_110 Hb_000160_320--Hb_003734_110 Hb_000883_060 Hb_000883_060 Hb_000160_320--Hb_000883_060 Hb_011386_020 Hb_011386_020 Hb_000160_320--Hb_011386_020 Hb_001898_160 Hb_001898_160 Hb_000160_320--Hb_001898_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.147569 0.0419131 0 0 0.0495446 0.328116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.114611 0.180117 0.466294 0.0742708 0.34358

CAGE analysis