Hb_000684_440

Information

Type -
Description -
Location Contig684: 424079-426323
Sequence    

Annotation

kegg
ID cic:CICLE_v100111082m
description hypothetical protein
nr
ID XP_006428914.1
description hypothetical protein CICLE_v100111082mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4ST67
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100111082mg PE=4 SV=1
Gene Ontology
ID GO:0005622
description two-component response regulator-like aprr7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54033: 423170-445732 , PASA_asmbl_54034: 423595-445732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_440 0.0 - - hypothetical protein CICLE_v100111082mg, partial [Citrus clementina]
2 Hb_001010_070 0.1268236606 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
3 Hb_002304_070 0.1574367384 - - -
4 Hb_012627_020 0.1580674451 - - PHYTOCHROME AND FLOWERING TIME 1 family protein [Populus trichocarpa]
5 Hb_000346_040 0.1651917621 - - -
6 Hb_020665_010 0.1656519351 - - PREDICTED: uncharacterized protein LOC103438977 isoform X2 [Malus domestica]
7 Hb_004020_020 0.1667388823 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g65820 [Jatropha curcas]
8 Hb_024991_010 0.1700024078 - - hypothetical protein B456_007G217100 [Gossypium raimondii]
9 Hb_001623_510 0.1712961097 - - transporter, putative [Ricinus communis]
10 Hb_168773_010 0.1733734875 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_011386_020 0.1775990866 - - unnamed protein product [Vitis vinifera]
12 Hb_002422_070 0.1787888854 - - PREDICTED: putative protein TPRXL [Malus domestica]
13 Hb_008447_040 0.1821730945 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
14 Hb_001863_500 0.1838426158 - - Protein brittle-1, chloroplast precursor, putative [Ricinus communis]
15 Hb_002307_170 0.1860763283 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
16 Hb_000631_080 0.1861505564 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Jatropha curcas]
17 Hb_000656_090 0.1864310952 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
18 Hb_003467_030 0.1871440024 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
19 Hb_004333_050 0.187157126 - - -
20 Hb_000062_140 0.1872413286 transcription factor TF Family: GRAS hypothetical protein JCGZ_17897 [Jatropha curcas]

Gene co-expression network

sample Hb_000684_440 Hb_000684_440 Hb_001010_070 Hb_001010_070 Hb_000684_440--Hb_001010_070 Hb_002304_070 Hb_002304_070 Hb_000684_440--Hb_002304_070 Hb_012627_020 Hb_012627_020 Hb_000684_440--Hb_012627_020 Hb_000346_040 Hb_000346_040 Hb_000684_440--Hb_000346_040 Hb_020665_010 Hb_020665_010 Hb_000684_440--Hb_020665_010 Hb_004020_020 Hb_004020_020 Hb_000684_440--Hb_004020_020 Hb_001010_070--Hb_020665_010 Hb_001010_070--Hb_002304_070 Hb_009270_010 Hb_009270_010 Hb_001010_070--Hb_009270_010 Hb_002419_030 Hb_002419_030 Hb_001010_070--Hb_002419_030 Hb_008447_040 Hb_008447_040 Hb_001010_070--Hb_008447_040 Hb_003467_030 Hb_003467_030 Hb_002304_070--Hb_003467_030 Hb_011386_020 Hb_011386_020 Hb_002304_070--Hb_011386_020 Hb_002338_050 Hb_002338_050 Hb_002304_070--Hb_002338_050 Hb_001595_080 Hb_001595_080 Hb_002304_070--Hb_001595_080 Hb_007023_030 Hb_007023_030 Hb_002304_070--Hb_007023_030 Hb_000656_090 Hb_000656_090 Hb_012627_020--Hb_000656_090 Hb_000160_160 Hb_000160_160 Hb_012627_020--Hb_000160_160 Hb_004333_050 Hb_004333_050 Hb_012627_020--Hb_004333_050 Hb_127552_060 Hb_127552_060 Hb_012627_020--Hb_127552_060 Hb_012627_020--Hb_008447_040 Hb_008447_030 Hb_008447_030 Hb_012627_020--Hb_008447_030 Hb_001006_020 Hb_001006_020 Hb_000346_040--Hb_001006_020 Hb_001235_030 Hb_001235_030 Hb_000346_040--Hb_001235_030 Hb_006420_100 Hb_006420_100 Hb_000346_040--Hb_006420_100 Hb_000072_180 Hb_000072_180 Hb_000346_040--Hb_000072_180 Hb_001234_100 Hb_001234_100 Hb_000346_040--Hb_001234_100 Hb_001390_130 Hb_001390_130 Hb_000346_040--Hb_001390_130 Hb_145915_010 Hb_145915_010 Hb_020665_010--Hb_145915_010 Hb_020665_010--Hb_009270_010 Hb_007922_020 Hb_007922_020 Hb_020665_010--Hb_007922_020 Hb_007317_140 Hb_007317_140 Hb_020665_010--Hb_007317_140 Hb_001005_050 Hb_001005_050 Hb_020665_010--Hb_001005_050 Hb_003370_050 Hb_003370_050 Hb_004020_020--Hb_003370_050 Hb_002667_050 Hb_002667_050 Hb_004020_020--Hb_002667_050 Hb_000028_390 Hb_000028_390 Hb_004020_020--Hb_000028_390 Hb_002099_080 Hb_002099_080 Hb_004020_020--Hb_002099_080 Hb_003294_090 Hb_003294_090 Hb_004020_020--Hb_003294_090 Hb_007820_010 Hb_007820_010 Hb_004020_020--Hb_007820_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.81226 6.38252 3.43696 13.1185 10.9937 47.1262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.6137 16.6933 40.7097 22.3261 43.7941

CAGE analysis