Hb_004333_050

Information

Type -
Description -
Location Contig4333: 61026-61442
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42394: 61763-62051 , PASA_asmbl_42395: 56331-63606
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004333_050 0.0 - - -
2 Hb_004224_020 0.141131681 - - PREDICTED: uncharacterized protein LOC105643786 [Jatropha curcas]
3 Hb_012627_020 0.1482057982 - - PHYTOCHROME AND FLOWERING TIME 1 family protein [Populus trichocarpa]
4 Hb_026745_020 0.1518877221 - - PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic [Jatropha curcas]
5 Hb_028912_040 0.1549264697 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]
6 Hb_127552_060 0.1561008135 transcription factor TF Family: SWI/SNF-BAF60b protein binding protein, putative [Ricinus communis]
7 Hb_012194_050 0.1563748517 - - Aspartyl aminopeptidase, putative [Ricinus communis]
8 Hb_138781_010 0.1578546833 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
9 Hb_005078_010 0.1620391421 - - Derlin-2, putative [Ricinus communis]
10 Hb_162603_010 0.162741696 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_007026_040 0.1633251442 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
12 Hb_008447_040 0.1678207223 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
13 Hb_000608_250 0.168043075 - - Cytidine/deoxycytidylate deaminase family protein isoform 2 [Theobroma cacao]
14 Hb_002095_010 0.1685581686 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
15 Hb_142328_010 0.1688219898 - - PREDICTED: uncharacterized protein LOC105630513 isoform X1 [Jatropha curcas]
16 Hb_187953_010 0.1696408222 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
17 Hb_006275_070 0.1699359559 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
18 Hb_002400_330 0.1728575794 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
19 Hb_000100_160 0.1738631156 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
20 Hb_001416_070 0.1747301455 - - oxidoreductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004333_050 Hb_004333_050 Hb_004224_020 Hb_004224_020 Hb_004333_050--Hb_004224_020 Hb_012627_020 Hb_012627_020 Hb_004333_050--Hb_012627_020 Hb_026745_020 Hb_026745_020 Hb_004333_050--Hb_026745_020 Hb_028912_040 Hb_028912_040 Hb_004333_050--Hb_028912_040 Hb_127552_060 Hb_127552_060 Hb_004333_050--Hb_127552_060 Hb_012194_050 Hb_012194_050 Hb_004333_050--Hb_012194_050 Hb_187953_010 Hb_187953_010 Hb_004224_020--Hb_187953_010 Hb_000470_080 Hb_000470_080 Hb_004224_020--Hb_000470_080 Hb_004224_020--Hb_028912_040 Hb_010427_010 Hb_010427_010 Hb_004224_020--Hb_010427_010 Hb_000236_310 Hb_000236_310 Hb_004224_020--Hb_000236_310 Hb_006660_010 Hb_006660_010 Hb_004224_020--Hb_006660_010 Hb_000656_090 Hb_000656_090 Hb_012627_020--Hb_000656_090 Hb_000160_160 Hb_000160_160 Hb_012627_020--Hb_000160_160 Hb_012627_020--Hb_127552_060 Hb_008447_040 Hb_008447_040 Hb_012627_020--Hb_008447_040 Hb_008447_030 Hb_008447_030 Hb_012627_020--Hb_008447_030 Hb_005701_060 Hb_005701_060 Hb_026745_020--Hb_005701_060 Hb_004060_030 Hb_004060_030 Hb_026745_020--Hb_004060_030 Hb_004303_040 Hb_004303_040 Hb_026745_020--Hb_004303_040 Hb_000193_270 Hb_000193_270 Hb_026745_020--Hb_000193_270 Hb_162603_010 Hb_162603_010 Hb_026745_020--Hb_162603_010 Hb_025194_100 Hb_025194_100 Hb_026745_020--Hb_025194_100 Hb_028912_040--Hb_127552_060 Hb_002600_140 Hb_002600_140 Hb_028912_040--Hb_002600_140 Hb_028912_040--Hb_187953_010 Hb_007026_040 Hb_007026_040 Hb_028912_040--Hb_007026_040 Hb_028912_040--Hb_000470_080 Hb_127552_060--Hb_008447_040 Hb_004448_090 Hb_004448_090 Hb_127552_060--Hb_004448_090 Hb_127552_060--Hb_187953_010 Hb_127552_060--Hb_000236_310 Hb_000159_100 Hb_000159_100 Hb_127552_060--Hb_000159_100 Hb_152202_010 Hb_152202_010 Hb_012194_050--Hb_152202_010 Hb_001416_070 Hb_001416_070 Hb_012194_050--Hb_001416_070 Hb_005078_010 Hb_005078_010 Hb_012194_050--Hb_005078_010 Hb_003010_020 Hb_003010_020 Hb_012194_050--Hb_003010_020 Hb_000362_150 Hb_000362_150 Hb_012194_050--Hb_000362_150 Hb_032050_040 Hb_032050_040 Hb_012194_050--Hb_032050_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.436064 0.247131 0.622858 0.758381 0.45666 2.33121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.368416 0.578745 0.9379 0.799913 1.28885

CAGE analysis