Hb_001523_020

Information

Type -
Description -
Location Contig1523: 35590-40336
Sequence    

Annotation

kegg
ID cit:102624560
description protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like
nr
ID XP_006491536.1
description PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID B9RIH0
description Leucine-rich repeat containing protein, putative OS=Ricinus communis GN=RCOM_1579060 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein suppressor of npr1- constitutive 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001523_020 0.0 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
2 Hb_036311_020 0.157070922 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_001780_120 0.1771888034 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
4 Hb_054127_050 0.1863016056 - - PREDICTED: uncharacterized protein LOC105638784 isoform X1 [Jatropha curcas]
5 Hb_001222_050 0.1947634558 - - hypothetical protein CICLE_v100161911mg, partial [Citrus clementina]
6 Hb_000362_120 0.198553908 - - glutamate receptor 2 plant, putative [Ricinus communis]
7 Hb_130194_010 0.2006466559 - - PREDICTED: uncharacterized protein LOC104115665 [Nicotiana tomentosiformis]
8 Hb_000422_120 0.2090503391 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Jatropha curcas]
9 Hb_129910_010 0.2093571647 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1X [Populus euphratica]
10 Hb_004553_020 0.2103177367 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
11 Hb_000283_080 0.2117195128 - - -
12 Hb_002513_030 0.2153810595 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
13 Hb_000856_150 0.2166011358 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
14 Hb_001946_250 0.2211381511 - - PREDICTED: dnaJ homolog subfamily C member 18 [Orycteropus afer afer]
15 Hb_005188_090 0.2233138934 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
16 Hb_001493_180 0.2284947223 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
17 Hb_000172_560 0.229658745 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]
18 Hb_001357_010 0.2298689125 - - -
19 Hb_029510_040 0.2309315635 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
20 Hb_001189_050 0.2336286558 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]

Gene co-expression network

sample Hb_001523_020 Hb_001523_020 Hb_036311_020 Hb_036311_020 Hb_001523_020--Hb_036311_020 Hb_001780_120 Hb_001780_120 Hb_001523_020--Hb_001780_120 Hb_054127_050 Hb_054127_050 Hb_001523_020--Hb_054127_050 Hb_001222_050 Hb_001222_050 Hb_001523_020--Hb_001222_050 Hb_000362_120 Hb_000362_120 Hb_001523_020--Hb_000362_120 Hb_130194_010 Hb_130194_010 Hb_001523_020--Hb_130194_010 Hb_000283_080 Hb_000283_080 Hb_036311_020--Hb_000283_080 Hb_129910_010 Hb_129910_010 Hb_036311_020--Hb_129910_010 Hb_036311_020--Hb_000362_120 Hb_001511_070 Hb_001511_070 Hb_036311_020--Hb_001511_070 Hb_000160_320 Hb_000160_320 Hb_036311_020--Hb_000160_320 Hb_119504_010 Hb_119504_010 Hb_001780_120--Hb_119504_010 Hb_001780_120--Hb_001222_050 Hb_001035_070 Hb_001035_070 Hb_001780_120--Hb_001035_070 Hb_000422_120 Hb_000422_120 Hb_001780_120--Hb_000422_120 Hb_004553_020 Hb_004553_020 Hb_001780_120--Hb_004553_020 Hb_004724_230 Hb_004724_230 Hb_054127_050--Hb_004724_230 Hb_054127_050--Hb_000422_120 Hb_002513_030 Hb_002513_030 Hb_054127_050--Hb_002513_030 Hb_001006_240 Hb_001006_240 Hb_054127_050--Hb_001006_240 Hb_001242_090 Hb_001242_090 Hb_054127_050--Hb_001242_090 Hb_005224_010 Hb_005224_010 Hb_001222_050--Hb_005224_010 Hb_011316_020 Hb_011316_020 Hb_001222_050--Hb_011316_020 Hb_000922_390 Hb_000922_390 Hb_001222_050--Hb_000922_390 Hb_000010_410 Hb_000010_410 Hb_001222_050--Hb_000010_410 Hb_003333_050 Hb_003333_050 Hb_001222_050--Hb_003333_050 Hb_000599_350 Hb_000599_350 Hb_001222_050--Hb_000599_350 Hb_002496_040 Hb_002496_040 Hb_000362_120--Hb_002496_040 Hb_002205_190 Hb_002205_190 Hb_000362_120--Hb_002205_190 Hb_001454_190 Hb_001454_190 Hb_000362_120--Hb_001454_190 Hb_012325_020 Hb_012325_020 Hb_000362_120--Hb_012325_020 Hb_000340_390 Hb_000340_390 Hb_000362_120--Hb_000340_390 Hb_007416_270 Hb_007416_270 Hb_000362_120--Hb_007416_270 Hb_000512_070 Hb_000512_070 Hb_130194_010--Hb_000512_070 Hb_037226_010 Hb_037226_010 Hb_130194_010--Hb_037226_010 Hb_130194_010--Hb_002513_030 Hb_032496_010 Hb_032496_010 Hb_130194_010--Hb_032496_010 Hb_130194_010--Hb_036311_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.75814 0.4167 0.0851277 0.410869 1.01893 1.43919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.2466 1.71039 9.15128 3.95281 3.34825

CAGE analysis