Hb_001006_240

Information

Type -
Description -
Location Contig1006: 285832-286479
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0005829
description tgf-beta receptor interacting protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001006_240 0.0 - - -
2 Hb_054127_050 0.2230576752 - - PREDICTED: uncharacterized protein LOC105638784 isoform X1 [Jatropha curcas]
3 Hb_001277_310 0.285760396 - - PREDICTED: putative ribonuclease H protein At1g65750 [Phoenix dactylifera]
4 Hb_001304_120 0.2875508584 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
5 Hb_099990_010 0.2893143741 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Vitis vinifera]
6 Hb_176825_010 0.2974027611 - - PREDICTED: uncharacterized protein LOC105630857 isoform X2 [Jatropha curcas]
7 Hb_003002_030 0.2974822048 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_004724_230 0.3018624854 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
9 Hb_003117_040 0.3133551818 - - cytochrome P450, putative [Ricinus communis]
10 Hb_002686_380 0.3170673586 - - -
11 Hb_005007_040 0.3176743892 - - hypothetical protein VITISV_032357 [Vitis vinifera]
12 Hb_000144_140 0.3291482394 - - PREDICTED: uncharacterized protein LOC105629608 [Jatropha curcas]
13 Hb_025457_010 0.3311850976 - - -
14 Hb_001545_210 0.334091957 - - hypothetical protein JCGZ_11132 [Jatropha curcas]
15 Hb_027760_030 0.3346507783 - - -
16 Hb_049275_010 0.3355897098 - - PREDICTED: F-box/LRR-repeat protein 4-like [Populus euphratica]
17 Hb_002733_030 0.3388613547 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
18 Hb_184403_010 0.3388954226 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Gossypium raimondii]
19 Hb_001242_090 0.3402387625 - - 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]
20 Hb_001703_120 0.3408139937 - - PREDICTED: uncharacterized protein LOC105116966 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_001006_240 Hb_001006_240 Hb_054127_050 Hb_054127_050 Hb_001006_240--Hb_054127_050 Hb_001277_310 Hb_001277_310 Hb_001006_240--Hb_001277_310 Hb_001304_120 Hb_001304_120 Hb_001006_240--Hb_001304_120 Hb_099990_010 Hb_099990_010 Hb_001006_240--Hb_099990_010 Hb_176825_010 Hb_176825_010 Hb_001006_240--Hb_176825_010 Hb_003002_030 Hb_003002_030 Hb_001006_240--Hb_003002_030 Hb_004724_230 Hb_004724_230 Hb_054127_050--Hb_004724_230 Hb_001523_020 Hb_001523_020 Hb_054127_050--Hb_001523_020 Hb_000422_120 Hb_000422_120 Hb_054127_050--Hb_000422_120 Hb_002513_030 Hb_002513_030 Hb_054127_050--Hb_002513_030 Hb_001242_090 Hb_001242_090 Hb_054127_050--Hb_001242_090 Hb_004413_030 Hb_004413_030 Hb_001277_310--Hb_004413_030 Hb_000144_140 Hb_000144_140 Hb_001277_310--Hb_000144_140 Hb_003446_040 Hb_003446_040 Hb_001277_310--Hb_003446_040 Hb_006344_010 Hb_006344_010 Hb_001277_310--Hb_006344_010 Hb_001009_130 Hb_001009_130 Hb_001277_310--Hb_001009_130 Hb_135624_010 Hb_135624_010 Hb_001277_310--Hb_135624_010 Hb_005007_040 Hb_005007_040 Hb_001304_120--Hb_005007_040 Hb_000144_040 Hb_000144_040 Hb_001304_120--Hb_000144_040 Hb_000065_050 Hb_000065_050 Hb_001304_120--Hb_000065_050 Hb_012295_020 Hb_012295_020 Hb_001304_120--Hb_012295_020 Hb_012071_010 Hb_012071_010 Hb_001304_120--Hb_012071_010 Hb_002092_040 Hb_002092_040 Hb_001304_120--Hb_002092_040 Hb_000216_030 Hb_000216_030 Hb_099990_010--Hb_000216_030 Hb_001008_180 Hb_001008_180 Hb_099990_010--Hb_001008_180 Hb_022276_020 Hb_022276_020 Hb_099990_010--Hb_022276_020 Hb_000115_010 Hb_000115_010 Hb_099990_010--Hb_000115_010 Hb_000820_050 Hb_000820_050 Hb_099990_010--Hb_000820_050 Hb_000783_030 Hb_000783_030 Hb_099990_010--Hb_000783_030 Hb_174473_010 Hb_174473_010 Hb_176825_010--Hb_174473_010 Hb_004899_060 Hb_004899_060 Hb_176825_010--Hb_004899_060 Hb_003881_050 Hb_003881_050 Hb_176825_010--Hb_003881_050 Hb_038011_010 Hb_038011_010 Hb_176825_010--Hb_038011_010 Hb_176825_010--Hb_004724_230 Hb_002686_380 Hb_002686_380 Hb_176825_010--Hb_002686_380 Hb_003002_030--Hb_054127_050 Hb_001106_050 Hb_001106_050 Hb_003002_030--Hb_001106_050 Hb_001545_210 Hb_001545_210 Hb_003002_030--Hb_001545_210 Hb_025311_020 Hb_025311_020 Hb_003002_030--Hb_025311_020 Hb_001943_020 Hb_001943_020 Hb_003002_030--Hb_001943_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0722721 0 0 0.114654 0 0.346205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.658757 0.396067 0.241645

CAGE analysis