Hb_001106_050

Information

Type -
Description -
Location Contig1106: 105481-107352
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001106_050 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_003881_050 0.2574391812 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
3 Hb_052689_010 0.2661795897 - - heat shock cognate protein [Solanum commersonii]
4 Hb_055101_010 0.2781413455 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_000251_090 0.2786411267 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
6 Hb_003688_160 0.2788742097 - - Presenilin-like family protein [Populus trichocarpa]
7 Hb_001242_090 0.2798863459 - - 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]
8 Hb_000000_100 0.2879640029 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
9 Hb_073452_010 0.2942142197 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_003002_030 0.2954050442 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_001545_210 0.2994705922 - - hypothetical protein JCGZ_11132 [Jatropha curcas]
12 Hb_000422_120 0.3033443884 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Jatropha curcas]
13 Hb_089206_010 0.3055603839 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
14 Hb_003688_170 0.31386372 - - PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
15 Hb_000357_120 0.3159974253 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
16 Hb_004899_060 0.317128903 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
17 Hb_038011_010 0.3222622962 - - hypothetical protein POPTR_0031s004401g, partial [Populus trichocarpa]
18 Hb_177179_010 0.3286397184 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
19 Hb_054127_050 0.3290940806 - - PREDICTED: uncharacterized protein LOC105638784 isoform X1 [Jatropha curcas]
20 Hb_009491_040 0.3304568762 - - PREDICTED: uncharacterized protein LOC105636967 [Jatropha curcas]

Gene co-expression network

sample Hb_001106_050 Hb_001106_050 Hb_003881_050 Hb_003881_050 Hb_001106_050--Hb_003881_050 Hb_052689_010 Hb_052689_010 Hb_001106_050--Hb_052689_010 Hb_055101_010 Hb_055101_010 Hb_001106_050--Hb_055101_010 Hb_000251_090 Hb_000251_090 Hb_001106_050--Hb_000251_090 Hb_003688_160 Hb_003688_160 Hb_001106_050--Hb_003688_160 Hb_001242_090 Hb_001242_090 Hb_001106_050--Hb_001242_090 Hb_038011_010 Hb_038011_010 Hb_003881_050--Hb_038011_010 Hb_003881_050--Hb_001242_090 Hb_085863_020 Hb_085863_020 Hb_003881_050--Hb_085863_020 Hb_073452_010 Hb_073452_010 Hb_003881_050--Hb_073452_010 Hb_090497_010 Hb_090497_010 Hb_003881_050--Hb_090497_010 Hb_003881_050--Hb_003688_160 Hb_001916_070 Hb_001916_070 Hb_052689_010--Hb_001916_070 Hb_052689_010--Hb_003688_160 Hb_052689_010--Hb_000251_090 Hb_089206_010 Hb_089206_010 Hb_052689_010--Hb_089206_010 Hb_003032_020 Hb_003032_020 Hb_052689_010--Hb_003032_020 Hb_007820_010 Hb_007820_010 Hb_052689_010--Hb_007820_010 Hb_004785_140 Hb_004785_140 Hb_055101_010--Hb_004785_140 Hb_000990_060 Hb_000990_060 Hb_055101_010--Hb_000990_060 Hb_002205_190 Hb_002205_190 Hb_055101_010--Hb_002205_190 Hb_080952_010 Hb_080952_010 Hb_055101_010--Hb_080952_010 Hb_000362_120 Hb_000362_120 Hb_055101_010--Hb_000362_120 Hb_002496_040 Hb_002496_040 Hb_055101_010--Hb_002496_040 Hb_000251_090--Hb_073452_010 Hb_000251_090--Hb_002205_190 Hb_000567_380 Hb_000567_380 Hb_000251_090--Hb_000567_380 Hb_000011_330 Hb_000011_330 Hb_000251_090--Hb_000011_330 Hb_001946_410 Hb_001946_410 Hb_000251_090--Hb_001946_410 Hb_008695_140 Hb_008695_140 Hb_000251_090--Hb_008695_140 Hb_004899_060 Hb_004899_060 Hb_003688_160--Hb_004899_060 Hb_174473_010 Hb_174473_010 Hb_003688_160--Hb_174473_010 Hb_003688_160--Hb_001242_090 Hb_003688_160--Hb_000251_090 Hb_003688_160--Hb_089206_010 Hb_001242_090--Hb_073452_010 Hb_001242_090--Hb_000251_090 Hb_001242_090--Hb_052689_010 Hb_003688_170 Hb_003688_170 Hb_001242_090--Hb_003688_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0476189 0.0317048 0.00950027 0.0100746 0.0127983 0.0350632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.172367 0.00912668 0.0479931

CAGE analysis