Hb_003688_170

Information

Type -
Description -
Location Contig3688: 109312-110884
Sequence    

Annotation

kegg
ID dosa:Os03t0603800-01
description Os03g0603800; Peptidase A22A, presenilin family protein.
nr
ID XP_011650205.1
description PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
swissprot
ID P52166
description Presenilin sel-12 OS=Caenorhabditis elegans GN=sel-12 PE=1 SV=2
trembl
ID M8BCG1
description Presenilin-like protein OS=Aegilops tauschii GN=F775_18079 PE=4 SV=1
Gene Ontology
ID GO:0000139
description presenilin-like protein at2g29900

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_170 0.0 - - PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
2 Hb_011063_020 0.1528097837 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
3 Hb_003688_160 0.218210534 - - Presenilin-like family protein [Populus trichocarpa]
4 Hb_000251_090 0.2245471657 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
5 Hb_001242_090 0.2269946033 - - 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]
6 Hb_000160_030 0.2277478066 - - putative S-adenosylmethionine-dependent methyltransferase [Morus notabilis]
7 Hb_024404_010 0.2378784447 - - PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
8 Hb_005211_160 0.2548095722 - - Protein PNS1, putative [Ricinus communis]
9 Hb_003881_050 0.2582250693 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
10 Hb_085863_020 0.259740278 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
11 Hb_073452_010 0.272847846 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_000590_030 0.2730220524 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004899_060 0.2730812373 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
14 Hb_127003_010 0.2742774908 - - PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
15 Hb_006076_010 0.274349424 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
16 Hb_000116_300 0.2746291775 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000041_150 0.2769506972 - - Stachyose synthase precursor, putative [Ricinus communis]
18 Hb_002289_130 0.2797794114 transcription factor TF Family: C2H2 arsenite inducuble RNA associated protein aip-1, putative [Ricinus communis]
19 Hb_004103_030 0.2887509603 - - conserved hypothetical protein [Ricinus communis]
20 Hb_038011_010 0.2891000084 - - hypothetical protein POPTR_0031s004401g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_003688_170 Hb_003688_170 Hb_011063_020 Hb_011063_020 Hb_003688_170--Hb_011063_020 Hb_003688_160 Hb_003688_160 Hb_003688_170--Hb_003688_160 Hb_000251_090 Hb_000251_090 Hb_003688_170--Hb_000251_090 Hb_001242_090 Hb_001242_090 Hb_003688_170--Hb_001242_090 Hb_000160_030 Hb_000160_030 Hb_003688_170--Hb_000160_030 Hb_024404_010 Hb_024404_010 Hb_003688_170--Hb_024404_010 Hb_011063_020--Hb_000160_030 Hb_000590_030 Hb_000590_030 Hb_011063_020--Hb_000590_030 Hb_011063_020--Hb_024404_010 Hb_011063_020--Hb_000251_090 Hb_002139_010 Hb_002139_010 Hb_011063_020--Hb_002139_010 Hb_004899_060 Hb_004899_060 Hb_003688_160--Hb_004899_060 Hb_052689_010 Hb_052689_010 Hb_003688_160--Hb_052689_010 Hb_174473_010 Hb_174473_010 Hb_003688_160--Hb_174473_010 Hb_003688_160--Hb_001242_090 Hb_003688_160--Hb_000251_090 Hb_089206_010 Hb_089206_010 Hb_003688_160--Hb_089206_010 Hb_073452_010 Hb_073452_010 Hb_000251_090--Hb_073452_010 Hb_002205_190 Hb_002205_190 Hb_000251_090--Hb_002205_190 Hb_000567_380 Hb_000567_380 Hb_000251_090--Hb_000567_380 Hb_000011_330 Hb_000011_330 Hb_000251_090--Hb_000011_330 Hb_001946_410 Hb_001946_410 Hb_000251_090--Hb_001946_410 Hb_008695_140 Hb_008695_140 Hb_000251_090--Hb_008695_140 Hb_001242_090--Hb_073452_010 Hb_003881_050 Hb_003881_050 Hb_001242_090--Hb_003881_050 Hb_001242_090--Hb_000251_090 Hb_001242_090--Hb_052689_010 Hb_000160_030--Hb_000590_030 Hb_011639_060 Hb_011639_060 Hb_000160_030--Hb_011639_060 Hb_000392_390 Hb_000392_390 Hb_000160_030--Hb_000392_390 Hb_000160_030--Hb_002139_010 Hb_104812_010 Hb_104812_010 Hb_024404_010--Hb_104812_010 Hb_007333_030 Hb_007333_030 Hb_024404_010--Hb_007333_030 Hb_135611_010 Hb_135611_010 Hb_024404_010--Hb_135611_010 Hb_148909_010 Hb_148909_010 Hb_024404_010--Hb_148909_010 Hb_002255_070 Hb_002255_070 Hb_024404_010--Hb_002255_070 Hb_000187_090 Hb_000187_090 Hb_024404_010--Hb_000187_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.722668 0.035213 0.135988 0.198238 0.637175 0.184624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0801086 0 1.68696 0.358622 0.249328

CAGE analysis