Hb_104812_010

Information

Type -
Description -
Location Contig104812: 2-2762
Sequence    

Annotation

kegg
ID vvi:100260024
description uncharacterized LOC100260024
nr
ID XP_011000804.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Populus euphratica]
swissprot
ID Q8RWA2
description Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana GN=MED9 PE=1 SV=1
trembl
ID A5B4B2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g02270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01650: 167-2805 , PASA_asmbl_01651: 366-1334
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104812_010 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Populus euphratica]
2 Hb_007333_030 0.1434557683 - - -
3 Hb_004117_100 0.1552501078 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
4 Hb_000883_030 0.1574166715 - - PREDICTED: uncharacterized protein LOC105636683 [Jatropha curcas]
5 Hb_000983_160 0.1656213872 - - hypothetical protein B456_009G199800 [Gossypium raimondii]
6 Hb_024404_010 0.1676678667 - - PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
7 Hb_135611_010 0.167846709 - - PREDICTED: uncharacterized protein LOC105142085 [Populus euphratica]
8 Hb_148909_010 0.1699279403 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
9 Hb_003912_030 0.1738274914 - - PREDICTED: uncharacterized protein LOC105638204 [Jatropha curcas]
10 Hb_001440_040 0.175358913 - - hypothetical protein POPTR_0008s03520g [Populus trichocarpa]
11 Hb_001221_140 0.1760582668 - - DNA binding protein, putative [Ricinus communis]
12 Hb_003206_090 0.1817716555 - - PREDICTED: protein trichome birefringence-like 5 [Jatropha curcas]
13 Hb_028872_170 0.1819687595 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003097_080 0.1844066914 - - hypothetical protein JCGZ_24481 [Jatropha curcas]
15 Hb_000853_210 0.1859558314 - - PREDICTED: uncharacterized protein LOC105642575 isoform X1 [Jatropha curcas]
16 Hb_007904_030 0.1886773282 - - PREDICTED: nuclear mitotic apparatus protein 1 [Jatropha curcas]
17 Hb_000363_460 0.1909477916 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_004545_170 0.1923801171 - - PREDICTED: autophagy-related protein 18h [Jatropha curcas]
19 Hb_000115_160 0.1926971589 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
20 Hb_027634_030 0.1928607217 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_104812_010 Hb_104812_010 Hb_007333_030 Hb_007333_030 Hb_104812_010--Hb_007333_030 Hb_004117_100 Hb_004117_100 Hb_104812_010--Hb_004117_100 Hb_000883_030 Hb_000883_030 Hb_104812_010--Hb_000883_030 Hb_000983_160 Hb_000983_160 Hb_104812_010--Hb_000983_160 Hb_024404_010 Hb_024404_010 Hb_104812_010--Hb_024404_010 Hb_135611_010 Hb_135611_010 Hb_104812_010--Hb_135611_010 Hb_001221_140 Hb_001221_140 Hb_007333_030--Hb_001221_140 Hb_000732_170 Hb_000732_170 Hb_007333_030--Hb_000732_170 Hb_003059_010 Hb_003059_010 Hb_007333_030--Hb_003059_010 Hb_000574_360 Hb_000574_360 Hb_007333_030--Hb_000574_360 Hb_000077_220 Hb_000077_220 Hb_007333_030--Hb_000077_220 Hb_000313_260 Hb_000313_260 Hb_004117_100--Hb_000313_260 Hb_000463_140 Hb_000463_140 Hb_004117_100--Hb_000463_140 Hb_034432_030 Hb_034432_030 Hb_004117_100--Hb_034432_030 Hb_000853_210 Hb_000853_210 Hb_004117_100--Hb_000853_210 Hb_005488_150 Hb_005488_150 Hb_004117_100--Hb_005488_150 Hb_048476_170 Hb_048476_170 Hb_004117_100--Hb_048476_170 Hb_000883_030--Hb_004117_100 Hb_003912_030 Hb_003912_030 Hb_000883_030--Hb_003912_030 Hb_000363_460 Hb_000363_460 Hb_000883_030--Hb_000363_460 Hb_001440_040 Hb_001440_040 Hb_000883_030--Hb_001440_040 Hb_002233_100 Hb_002233_100 Hb_000883_030--Hb_002233_100 Hb_000883_030--Hb_000853_210 Hb_017151_010 Hb_017151_010 Hb_000983_160--Hb_017151_010 Hb_000849_020 Hb_000849_020 Hb_000983_160--Hb_000849_020 Hb_001604_120 Hb_001604_120 Hb_000983_160--Hb_001604_120 Hb_002539_110 Hb_002539_110 Hb_000983_160--Hb_002539_110 Hb_000445_140 Hb_000445_140 Hb_000983_160--Hb_000445_140 Hb_001021_220 Hb_001021_220 Hb_000983_160--Hb_001021_220 Hb_024404_010--Hb_007333_030 Hb_024404_010--Hb_135611_010 Hb_148909_010 Hb_148909_010 Hb_024404_010--Hb_148909_010 Hb_002255_070 Hb_002255_070 Hb_024404_010--Hb_002255_070 Hb_000187_090 Hb_000187_090 Hb_024404_010--Hb_000187_090 Hb_135611_010--Hb_148909_010 Hb_004627_060 Hb_004627_060 Hb_135611_010--Hb_004627_060 Hb_000516_040 Hb_000516_040 Hb_135611_010--Hb_000516_040 Hb_000088_130 Hb_000088_130 Hb_135611_010--Hb_000088_130 Hb_000072_150 Hb_000072_150 Hb_135611_010--Hb_000072_150 Hb_001900_120 Hb_001900_120 Hb_135611_010--Hb_001900_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.9013 7.3233 12.7215 11.9345 26.8861 11.2591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10688 1.89433 20.5172 11.6149 13.6022

CAGE analysis