Hb_000516_040

Information

Type -
Description -
Location Contig516: 93966-99641
Sequence    

Annotation

kegg
ID rcu:RCOM_0934860
description hypothetical protein
nr
ID XP_012091555.1
description PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JAY5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21398 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46501: 94922-99546 , PASA_asmbl_46502: 94922-99080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000516_040 0.0 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
2 Hb_135611_010 0.1272067267 - - PREDICTED: uncharacterized protein LOC105142085 [Populus euphratica]
3 Hb_000983_160 0.1401136794 - - hypothetical protein B456_009G199800 [Gossypium raimondii]
4 Hb_000563_600 0.1488807277 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
5 Hb_000172_540 0.1555508214 - - hypothetical protein POPTR_0005s08350g [Populus trichocarpa]
6 Hb_002478_030 0.1555648665 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Jatropha curcas]
7 Hb_029866_100 0.155804432 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
8 Hb_000071_120 0.1569702962 - - PREDICTED: fasciclin-like arabinogalactan protein 4 [Jatropha curcas]
9 Hb_003872_010 0.1572721812 - - hypothetical protein PRUPE_ppa013215mg [Prunus persica]
10 Hb_007904_210 0.1582245044 - - PREDICTED: oxysterol-binding protein-related protein 1D [Jatropha curcas]
11 Hb_001008_170 0.1582511196 transcription factor TF Family: mTERF RNA binding protein, putative [Ricinus communis]
12 Hb_002542_020 0.1599154607 - - PREDICTED: uncharacterized protein LOC105634003 isoform X1 [Jatropha curcas]
13 Hb_147505_010 0.1610961952 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
14 Hb_000637_150 0.1619564874 - - Protein CASP, putative [Ricinus communis]
15 Hb_000684_080 0.1623381593 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
16 Hb_000010_270 0.1632735828 - - PREDICTED: vignain [Jatropha curcas]
17 Hb_001050_010 0.1634981481 - - Advillin [Gossypium arboreum]
18 Hb_002000_060 0.1666092736 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]
19 Hb_000634_020 0.1675945588 - - hypothetical protein JCGZ_11888 [Jatropha curcas]
20 Hb_002539_110 0.1677895286 - - hypothetical protein JCGZ_15697 [Jatropha curcas]

Gene co-expression network

sample Hb_000516_040 Hb_000516_040 Hb_135611_010 Hb_135611_010 Hb_000516_040--Hb_135611_010 Hb_000983_160 Hb_000983_160 Hb_000516_040--Hb_000983_160 Hb_000563_600 Hb_000563_600 Hb_000516_040--Hb_000563_600 Hb_000172_540 Hb_000172_540 Hb_000516_040--Hb_000172_540 Hb_002478_030 Hb_002478_030 Hb_000516_040--Hb_002478_030 Hb_029866_100 Hb_029866_100 Hb_000516_040--Hb_029866_100 Hb_148909_010 Hb_148909_010 Hb_135611_010--Hb_148909_010 Hb_004627_060 Hb_004627_060 Hb_135611_010--Hb_004627_060 Hb_000088_130 Hb_000088_130 Hb_135611_010--Hb_000088_130 Hb_000072_150 Hb_000072_150 Hb_135611_010--Hb_000072_150 Hb_001900_120 Hb_001900_120 Hb_135611_010--Hb_001900_120 Hb_017151_010 Hb_017151_010 Hb_000983_160--Hb_017151_010 Hb_000849_020 Hb_000849_020 Hb_000983_160--Hb_000849_020 Hb_001604_120 Hb_001604_120 Hb_000983_160--Hb_001604_120 Hb_002539_110 Hb_002539_110 Hb_000983_160--Hb_002539_110 Hb_000445_140 Hb_000445_140 Hb_000983_160--Hb_000445_140 Hb_001021_220 Hb_001021_220 Hb_000983_160--Hb_001021_220 Hb_000599_080 Hb_000599_080 Hb_000563_600--Hb_000599_080 Hb_004631_190 Hb_004631_190 Hb_000563_600--Hb_004631_190 Hb_002311_070 Hb_002311_070 Hb_000563_600--Hb_002311_070 Hb_000922_020 Hb_000922_020 Hb_000563_600--Hb_000922_020 Hb_000002_490 Hb_000002_490 Hb_000563_600--Hb_000002_490 Hb_000718_070 Hb_000718_070 Hb_000563_600--Hb_000718_070 Hb_029904_020 Hb_029904_020 Hb_000172_540--Hb_029904_020 Hb_000172_540--Hb_001021_220 Hb_003104_040 Hb_003104_040 Hb_000172_540--Hb_003104_040 Hb_000172_540--Hb_029866_100 Hb_000172_540--Hb_000983_160 Hb_003398_100 Hb_003398_100 Hb_000172_540--Hb_003398_100 Hb_001008_170 Hb_001008_170 Hb_002478_030--Hb_001008_170 Hb_000684_080 Hb_000684_080 Hb_002478_030--Hb_000684_080 Hb_001257_030 Hb_001257_030 Hb_002478_030--Hb_001257_030 Hb_159809_030 Hb_159809_030 Hb_002478_030--Hb_159809_030 Hb_001488_220 Hb_001488_220 Hb_002478_030--Hb_001488_220 Hb_000634_020 Hb_000634_020 Hb_002478_030--Hb_000634_020 Hb_001396_280 Hb_001396_280 Hb_029866_100--Hb_001396_280 Hb_001500_110 Hb_001500_110 Hb_029866_100--Hb_001500_110 Hb_012215_010 Hb_012215_010 Hb_029866_100--Hb_012215_010 Hb_000733_050 Hb_000733_050 Hb_029866_100--Hb_000733_050 Hb_002837_060 Hb_002837_060 Hb_029866_100--Hb_002837_060 Hb_000120_550 Hb_000120_550 Hb_029866_100--Hb_000120_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.0642 7.63208 11.5934 15.5992 13.5912 6.43932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.05447 2.39063 8.76823 9.10334 9.00771

CAGE analysis