Hb_000172_540

Information

Type -
Description -
Location Contig172: 595671-599917
Sequence    

Annotation

kegg
ID pop:POPTR_0005s08350g
description hypothetical protein
nr
ID XP_006382916.1
description hypothetical protein POPTR_0005s08350g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9PEK7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s08350g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16186: 595694-599665
cDNA
(Sanger)
(ID:Location)		 005_D01.ab1: 596172-599491 , 023_M23.ab1: 596144-599573 , 024_A13.ab1: 596007-599604

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_540 0.0 - - hypothetical protein POPTR_0005s08350g [Populus trichocarpa]
2 Hb_029904_020 0.1059636216 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
3 Hb_001021_220 0.1128966062 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
4 Hb_003104_040 0.1152679925 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
5 Hb_029866_100 0.1173521947 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
6 Hb_000983_160 0.1197330474 - - hypothetical protein B456_009G199800 [Gossypium raimondii]
7 Hb_003398_100 0.1199804777 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012215_010 0.121395611 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
9 Hb_009296_010 0.1218193052 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
10 Hb_028308_010 0.1222163322 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
11 Hb_000637_150 0.1228145378 - - Protein CASP, putative [Ricinus communis]
12 Hb_001396_280 0.1229976698 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
13 Hb_002559_040 0.1233580265 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 5 isoform X2 [Jatropha curcas]
14 Hb_002304_060 0.1254876078 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
15 Hb_011344_160 0.1274237598 - - PREDICTED: primary amine oxidase [Jatropha curcas]
16 Hb_000044_040 0.1277607429 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
17 Hb_000640_100 0.1280896245 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_132840_110 0.1296445471 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
19 Hb_000139_230 0.1296522125 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
20 Hb_007441_130 0.1309229485 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000172_540 Hb_000172_540 Hb_029904_020 Hb_029904_020 Hb_000172_540--Hb_029904_020 Hb_001021_220 Hb_001021_220 Hb_000172_540--Hb_001021_220 Hb_003104_040 Hb_003104_040 Hb_000172_540--Hb_003104_040 Hb_029866_100 Hb_029866_100 Hb_000172_540--Hb_029866_100 Hb_000983_160 Hb_000983_160 Hb_000172_540--Hb_000983_160 Hb_003398_100 Hb_003398_100 Hb_000172_540--Hb_003398_100 Hb_029904_020--Hb_001021_220 Hb_000208_260 Hb_000208_260 Hb_029904_020--Hb_000208_260 Hb_012215_010 Hb_012215_010 Hb_029904_020--Hb_012215_010 Hb_010150_020 Hb_010150_020 Hb_029904_020--Hb_010150_020 Hb_001948_130 Hb_001948_130 Hb_029904_020--Hb_001948_130 Hb_003549_090 Hb_003549_090 Hb_029904_020--Hb_003549_090 Hb_001377_110 Hb_001377_110 Hb_001021_220--Hb_001377_110 Hb_001789_190 Hb_001789_190 Hb_001021_220--Hb_001789_190 Hb_000139_230 Hb_000139_230 Hb_001021_220--Hb_000139_230 Hb_001268_280 Hb_001268_280 Hb_001021_220--Hb_001268_280 Hb_132840_110 Hb_132840_110 Hb_001021_220--Hb_132840_110 Hb_073973_150 Hb_073973_150 Hb_003104_040--Hb_073973_150 Hb_003104_040--Hb_012215_010 Hb_005053_010 Hb_005053_010 Hb_003104_040--Hb_005053_010 Hb_010272_010 Hb_010272_010 Hb_003104_040--Hb_010272_010 Hb_000640_070 Hb_000640_070 Hb_003104_040--Hb_000640_070 Hb_002539_110 Hb_002539_110 Hb_003104_040--Hb_002539_110 Hb_001396_280 Hb_001396_280 Hb_029866_100--Hb_001396_280 Hb_001500_110 Hb_001500_110 Hb_029866_100--Hb_001500_110 Hb_029866_100--Hb_012215_010 Hb_000733_050 Hb_000733_050 Hb_029866_100--Hb_000733_050 Hb_002837_060 Hb_002837_060 Hb_029866_100--Hb_002837_060 Hb_000120_550 Hb_000120_550 Hb_029866_100--Hb_000120_550 Hb_017151_010 Hb_017151_010 Hb_000983_160--Hb_017151_010 Hb_000849_020 Hb_000849_020 Hb_000983_160--Hb_000849_020 Hb_001604_120 Hb_001604_120 Hb_000983_160--Hb_001604_120 Hb_000983_160--Hb_002539_110 Hb_000445_140 Hb_000445_140 Hb_000983_160--Hb_000445_140 Hb_000983_160--Hb_001021_220 Hb_000820_150 Hb_000820_150 Hb_003398_100--Hb_000820_150 Hb_033642_040 Hb_033642_040 Hb_003398_100--Hb_033642_040 Hb_003398_100--Hb_003104_040 Hb_001789_020 Hb_001789_020 Hb_003398_100--Hb_001789_020 Hb_002784_030 Hb_002784_030 Hb_003398_100--Hb_002784_030 Hb_003398_100--Hb_073973_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
298.081 91.2128 191.103 187.465 184.844 197.452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
138.324 31.209 77.9569 158.551 211.111

CAGE analysis