Hb_000983_160

Information

Type -
Description -
Location Contig983: 124132-143031
Sequence    

Annotation

kegg
ID rcu:RCOM_1595280
description phosphatidylinositol transporter, putative
nr
ID KJB58224.1
description hypothetical protein B456_009G199800 [Gossypium raimondii]
swissprot
ID F4IHJ0
description Phosphatidylinositol/phosphatidylcholine transfer protein SFH8 OS=Arabidopsis thaliana GN=SFH8 PE=2 SV=1
trembl
ID A0A0D2TMX6
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G199800 PE=4 SV=1
Gene Ontology
ID GO:0005622
description phosphatidylinositol phosphatidylcholine transfer protein sfh8-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64475: 119432-123382 , PASA_asmbl_64477: 124459-124782 , PASA_asmbl_64478: 125978-132169 , PASA_asmbl_64479: 134742-135191 , PASA_asmbl_64480: 135334-136317 , PASA_asmbl_64481: 136476-137235 , PASA_asmbl_64482: 137456-137816 , PASA_asmbl_64483: 141714-142247
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000983_160 0.0 - - hypothetical protein B456_009G199800 [Gossypium raimondii]
2 Hb_017151_010 0.0949270297 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
3 Hb_000849_020 0.1045414568 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
4 Hb_001604_120 0.1076367552 - - PREDICTED: hemK methyltransferase family member 1 isoform X2 [Jatropha curcas]
5 Hb_002539_110 0.1076818272 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
6 Hb_000445_140 0.1123649419 - - hypothetical protein RCOM_0561550 [Ricinus communis]
7 Hb_001021_220 0.1129201891 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
8 Hb_001377_110 0.1140929048 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
9 Hb_053079_020 0.1144632929 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
10 Hb_004800_180 0.1147960557 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
11 Hb_013726_080 0.1158389789 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
12 Hb_002311_310 0.1171984671 - - PREDICTED: uncharacterized protein LOC100246622 [Vitis vinifera]
13 Hb_150651_030 0.1178126128 - - PREDICTED: metallophosphoesterase 1-like [Jatropha curcas]
14 Hb_025557_050 0.1181212504 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
15 Hb_000172_540 0.1197330474 - - hypothetical protein POPTR_0005s08350g [Populus trichocarpa]
16 Hb_001379_110 0.1197488437 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
17 Hb_009296_010 0.119950257 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
18 Hb_000015_100 0.1201534509 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
19 Hb_001619_050 0.1208329842 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
20 Hb_034432_030 0.1211451098 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000983_160 Hb_000983_160 Hb_017151_010 Hb_017151_010 Hb_000983_160--Hb_017151_010 Hb_000849_020 Hb_000849_020 Hb_000983_160--Hb_000849_020 Hb_001604_120 Hb_001604_120 Hb_000983_160--Hb_001604_120 Hb_002539_110 Hb_002539_110 Hb_000983_160--Hb_002539_110 Hb_000445_140 Hb_000445_140 Hb_000983_160--Hb_000445_140 Hb_001021_220 Hb_001021_220 Hb_000983_160--Hb_001021_220 Hb_025557_050 Hb_025557_050 Hb_017151_010--Hb_025557_050 Hb_053079_020 Hb_053079_020 Hb_017151_010--Hb_053079_020 Hb_001789_190 Hb_001789_190 Hb_017151_010--Hb_001789_190 Hb_000115_280 Hb_000115_280 Hb_017151_010--Hb_000115_280 Hb_001619_050 Hb_001619_050 Hb_017151_010--Hb_001619_050 Hb_032202_080 Hb_032202_080 Hb_017151_010--Hb_032202_080 Hb_000107_400 Hb_000107_400 Hb_000849_020--Hb_000107_400 Hb_010812_050 Hb_010812_050 Hb_000849_020--Hb_010812_050 Hb_003884_030 Hb_003884_030 Hb_000849_020--Hb_003884_030 Hb_002749_110 Hb_002749_110 Hb_000849_020--Hb_002749_110 Hb_001898_090 Hb_001898_090 Hb_000849_020--Hb_001898_090 Hb_000849_020--Hb_001021_220 Hb_000181_240 Hb_000181_240 Hb_001604_120--Hb_000181_240 Hb_002498_140 Hb_002498_140 Hb_001604_120--Hb_002498_140 Hb_000015_100 Hb_000015_100 Hb_001604_120--Hb_000015_100 Hb_001604_120--Hb_000445_140 Hb_000416_200 Hb_000416_200 Hb_001604_120--Hb_000416_200 Hb_000365_100 Hb_000365_100 Hb_001604_120--Hb_000365_100 Hb_012215_010 Hb_012215_010 Hb_002539_110--Hb_012215_010 Hb_010272_010 Hb_010272_010 Hb_002539_110--Hb_010272_010 Hb_000362_170 Hb_000362_170 Hb_002539_110--Hb_000362_170 Hb_005895_010 Hb_005895_010 Hb_002539_110--Hb_005895_010 Hb_162275_040 Hb_162275_040 Hb_002539_110--Hb_162275_040 Hb_013726_080 Hb_013726_080 Hb_002539_110--Hb_013726_080 Hb_000445_140--Hb_001619_050 Hb_001014_100 Hb_001014_100 Hb_000445_140--Hb_001014_100 Hb_005496_050 Hb_005496_050 Hb_000445_140--Hb_005496_050 Hb_000445_140--Hb_017151_010 Hb_000445_140--Hb_025557_050 Hb_002870_020 Hb_002870_020 Hb_000445_140--Hb_002870_020 Hb_001377_110 Hb_001377_110 Hb_001021_220--Hb_001377_110 Hb_001021_220--Hb_001789_190 Hb_000139_230 Hb_000139_230 Hb_001021_220--Hb_000139_230 Hb_029904_020 Hb_029904_020 Hb_001021_220--Hb_029904_020 Hb_001268_280 Hb_001268_280 Hb_001021_220--Hb_001268_280 Hb_132840_110 Hb_132840_110 Hb_001021_220--Hb_132840_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7521 4.94376 9.69489 6.41285 10.6636 7.77845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.06915 2.36857 6.35141 5.78532 10.6974

CAGE analysis