Hb_000072_150

Information

Type -
Description -
Location Contig72: 295807-298248
Sequence    

Annotation

kegg
ID pop:POPTR_0004s21450g
description SEC1-family transport family protein
nr
ID XP_011040777.1
description PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
swissprot
ID Q9SL48
description SEC1 family transport protein SLY1 OS=Arabidopsis thaliana GN=SLY1 PE=1 SV=1
trembl
ID B9MYY5
description SEC1-family transport family protein OS=Populus trichocarpa GN=POPTR_0004s21450g PE=4 SV=1
Gene Ontology
ID GO:0005623
description sec1 family transport protein sly1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55584: 295782-298244
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_150 0.0 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
2 Hb_000510_200 0.0695074676 - - nucleotide binding protein, putative [Ricinus communis]
3 Hb_002893_150 0.0866276778 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
4 Hb_001235_200 0.0894956128 - - conserved hypothetical protein [Ricinus communis]
5 Hb_028487_110 0.0908040224 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
6 Hb_001599_030 0.0945405892 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
7 Hb_002131_020 0.0973050702 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
8 Hb_000244_250 0.0987360691 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
9 Hb_000100_070 0.0993980213 - - PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Jatropha curcas]
10 Hb_000983_150 0.1003352339 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
11 Hb_000329_090 0.1005774826 - - arginase, putative [Ricinus communis]
12 Hb_006449_050 0.1013822618 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
13 Hb_003531_060 0.1015638787 - - unnamed protein product [Coffea canephora]
14 Hb_002798_040 0.1038627582 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
15 Hb_004218_240 0.1054344445 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
16 Hb_000320_200 0.1058019433 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
17 Hb_002909_050 0.1061628756 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000023_190 0.1074096942 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
19 Hb_002235_160 0.1099261266 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
20 Hb_001496_070 0.1102178416 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000072_150 Hb_000072_150 Hb_000510_200 Hb_000510_200 Hb_000072_150--Hb_000510_200 Hb_002893_150 Hb_002893_150 Hb_000072_150--Hb_002893_150 Hb_001235_200 Hb_001235_200 Hb_000072_150--Hb_001235_200 Hb_028487_110 Hb_028487_110 Hb_000072_150--Hb_028487_110 Hb_001599_030 Hb_001599_030 Hb_000072_150--Hb_001599_030 Hb_002131_020 Hb_002131_020 Hb_000072_150--Hb_002131_020 Hb_000510_200--Hb_002893_150 Hb_002798_040 Hb_002798_040 Hb_000510_200--Hb_002798_040 Hb_000429_120 Hb_000429_120 Hb_000510_200--Hb_000429_120 Hb_000100_070 Hb_000100_070 Hb_000510_200--Hb_000100_070 Hb_000046_440 Hb_000046_440 Hb_000510_200--Hb_000046_440 Hb_000531_090 Hb_000531_090 Hb_002893_150--Hb_000531_090 Hb_000789_080 Hb_000789_080 Hb_002893_150--Hb_000789_080 Hb_002893_150--Hb_001235_200 Hb_125092_020 Hb_125092_020 Hb_002893_150--Hb_125092_020 Hb_000436_040 Hb_000436_040 Hb_002893_150--Hb_000436_040 Hb_001235_200--Hb_001599_030 Hb_000714_050 Hb_000714_050 Hb_001235_200--Hb_000714_050 Hb_000035_040 Hb_000035_040 Hb_001235_200--Hb_000035_040 Hb_010381_060 Hb_010381_060 Hb_001235_200--Hb_010381_060 Hb_000320_200 Hb_000320_200 Hb_001235_200--Hb_000320_200 Hb_007558_120 Hb_007558_120 Hb_001235_200--Hb_007558_120 Hb_005977_090 Hb_005977_090 Hb_028487_110--Hb_005977_090 Hb_001638_250 Hb_001638_250 Hb_028487_110--Hb_001638_250 Hb_009535_020 Hb_009535_020 Hb_028487_110--Hb_009535_020 Hb_000329_090 Hb_000329_090 Hb_028487_110--Hb_000329_090 Hb_000743_040 Hb_000743_040 Hb_028487_110--Hb_000743_040 Hb_028487_110--Hb_000046_440 Hb_001599_030--Hb_000320_200 Hb_003544_100 Hb_003544_100 Hb_001599_030--Hb_003544_100 Hb_001599_030--Hb_010381_060 Hb_002749_110 Hb_002749_110 Hb_001599_030--Hb_002749_110 Hb_009411_010 Hb_009411_010 Hb_001599_030--Hb_009411_010 Hb_001680_010 Hb_001680_010 Hb_002131_020--Hb_001680_010 Hb_005993_020 Hb_005993_020 Hb_002131_020--Hb_005993_020 Hb_000983_150 Hb_000983_150 Hb_002131_020--Hb_000983_150 Hb_002835_370 Hb_002835_370 Hb_002131_020--Hb_002835_370 Hb_010931_120 Hb_010931_120 Hb_002131_020--Hb_010931_120 Hb_009627_010 Hb_009627_010 Hb_002131_020--Hb_009627_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.4382 13.4526 7.60174 13.0058 30.1923 31.4919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.8039 8.18643 20.4264 18.6255 21.228

CAGE analysis