Hb_003059_010

Information

Type -
Description -
Location Contig3059: 18713-27233
Sequence    

Annotation

kegg
ID sot:102595262
description uncharacterized LOC102595262
nr
ID XP_009788781.1
description PREDICTED: uncharacterized protein LOC104236538 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M1AZY6
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32350: 24939-26921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003059_010 0.0 - - PREDICTED: uncharacterized protein LOC104236538 [Nicotiana sylvestris]
2 Hb_063943_010 0.1405753375 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
3 Hb_003124_030 0.1728587566 - - At4g33625-like protein [Brassica napus]
4 Hb_001221_140 0.1782736321 - - DNA binding protein, putative [Ricinus communis]
5 Hb_000077_220 0.1797357595 - - PREDICTED: uncharacterized protein LOC105647046 [Jatropha curcas]
6 Hb_002851_080 0.1827705541 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
7 Hb_007333_030 0.1849757026 - - -
8 Hb_146339_010 0.1852291376 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
9 Hb_000714_040 0.1868029871 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
10 Hb_001440_040 0.1871820062 - - hypothetical protein POPTR_0008s03520g [Populus trichocarpa]
11 Hb_000574_360 0.191559805 - - PREDICTED: formamidopyrimidine-DNA glycosylase-like isoform X1 [Vitis vinifera]
12 Hb_002374_210 0.1927442245 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
13 Hb_004064_050 0.1929161303 - - Structural maintenance of chromosome, putative [Ricinus communis]
14 Hb_002328_040 0.1959551305 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
15 Hb_104812_010 0.196408506 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Populus euphratica]
16 Hb_013459_010 0.200146977 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
17 Hb_008247_020 0.2005042839 - - PREDICTED: cyclin-L1-1-like [Jatropha curcas]
18 Hb_022250_100 0.2022503925 - - calnexin, putative [Ricinus communis]
19 Hb_000261_410 0.2028749227 - - PREDICTED: myosin-binding protein 3 [Jatropha curcas]
20 Hb_007035_040 0.2063578467 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003059_010 Hb_003059_010 Hb_063943_010 Hb_063943_010 Hb_003059_010--Hb_063943_010 Hb_003124_030 Hb_003124_030 Hb_003059_010--Hb_003124_030 Hb_001221_140 Hb_001221_140 Hb_003059_010--Hb_001221_140 Hb_000077_220 Hb_000077_220 Hb_003059_010--Hb_000077_220 Hb_002851_080 Hb_002851_080 Hb_003059_010--Hb_002851_080 Hb_007333_030 Hb_007333_030 Hb_003059_010--Hb_007333_030 Hb_146339_010 Hb_146339_010 Hb_063943_010--Hb_146339_010 Hb_089206_010 Hb_089206_010 Hb_063943_010--Hb_089206_010 Hb_003175_110 Hb_003175_110 Hb_063943_010--Hb_003175_110 Hb_183443_010 Hb_183443_010 Hb_063943_010--Hb_183443_010 Hb_063943_010--Hb_003124_030 Hb_156850_090 Hb_156850_090 Hb_003124_030--Hb_156850_090 Hb_000562_050 Hb_000562_050 Hb_003124_030--Hb_000562_050 Hb_001008_050 Hb_001008_050 Hb_003124_030--Hb_001008_050 Hb_158092_080 Hb_158092_080 Hb_003124_030--Hb_158092_080 Hb_001789_020 Hb_001789_020 Hb_003124_030--Hb_001789_020 Hb_001085_290 Hb_001085_290 Hb_003124_030--Hb_001085_290 Hb_003939_040 Hb_003939_040 Hb_001221_140--Hb_003939_040 Hb_007380_140 Hb_007380_140 Hb_001221_140--Hb_007380_140 Hb_001221_140--Hb_000077_220 Hb_001882_130 Hb_001882_130 Hb_001221_140--Hb_001882_130 Hb_178968_050 Hb_178968_050 Hb_001221_140--Hb_178968_050 Hb_008247_020 Hb_008247_020 Hb_001221_140--Hb_008247_020 Hb_002814_060 Hb_002814_060 Hb_000077_220--Hb_002814_060 Hb_143960_010 Hb_143960_010 Hb_000077_220--Hb_143960_010 Hb_000599_170 Hb_000599_170 Hb_000077_220--Hb_000599_170 Hb_001508_020 Hb_001508_020 Hb_000077_220--Hb_001508_020 Hb_000106_020 Hb_000106_020 Hb_000077_220--Hb_000106_020 Hb_001006_340 Hb_001006_340 Hb_002851_080--Hb_001006_340 Hb_008114_050 Hb_008114_050 Hb_002851_080--Hb_008114_050 Hb_012146_050 Hb_012146_050 Hb_002851_080--Hb_012146_050 Hb_001431_120 Hb_001431_120 Hb_002851_080--Hb_001431_120 Hb_000256_020 Hb_000256_020 Hb_002851_080--Hb_000256_020 Hb_004411_030 Hb_004411_030 Hb_002851_080--Hb_004411_030 Hb_104812_010 Hb_104812_010 Hb_007333_030--Hb_104812_010 Hb_007333_030--Hb_001221_140 Hb_000732_170 Hb_000732_170 Hb_007333_030--Hb_000732_170 Hb_000574_360 Hb_000574_360 Hb_007333_030--Hb_000574_360 Hb_007333_030--Hb_000077_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.63282 5.02006 7.53026 2.92758 6.32744 5.26312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0750828 0.177092 6.14538 5.03239 9.04757

CAGE analysis