Hb_003124_030

Information

Type -
Description -
Location Contig3124: 12098-15473
Sequence    

Annotation

kegg
ID rcu:RCOM_0886640
description hypothetical protein
nr
ID AID60086.1
description At4g33625-like protein [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A068FAW0
description At4g33625-like protein OS=Brassica napus GN=GSBNAPT00096218001 PE=4 SV=1
Gene Ontology
ID GO:0005774
description at4g33625-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33010: 13858-14252 , PASA_asmbl_33011: 14389-15415
cDNA
(Sanger)
(ID:Location)		 010_A21.ab1: 14389-15415

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003124_030 0.0 - - At4g33625-like protein [Brassica napus]
2 Hb_156850_090 0.1141687261 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
3 Hb_000562_050 0.1174154672 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
4 Hb_001008_050 0.1203893695 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
5 Hb_158092_080 0.1308337376 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
6 Hb_001789_020 0.1333443487 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]
7 Hb_001085_290 0.1391055554 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
8 Hb_000022_160 0.1415789771 - - -
9 Hb_000320_470 0.1427471308 - - calcium-dependent protein kinase [Hevea brasiliensis]
10 Hb_001689_040 0.143321771 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like [Jatropha curcas]
11 Hb_001396_240 0.1435538789 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
12 Hb_022092_010 0.1472038883 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
13 Hb_000181_100 0.1472688307 - - PREDICTED: protein starmaker [Jatropha curcas]
14 Hb_000455_130 0.1479958627 - - PREDICTED: aspartic proteinase A1-like isoform X1 [Jatropha curcas]
15 Hb_015292_060 0.1483681017 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
16 Hb_033642_060 0.1484883573 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
17 Hb_001341_010 0.1491842595 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
18 Hb_022250_100 0.150547973 - - calnexin, putative [Ricinus communis]
19 Hb_001801_020 0.1506719455 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
20 Hb_000453_030 0.1509007007 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_003124_030 Hb_003124_030 Hb_156850_090 Hb_156850_090 Hb_003124_030--Hb_156850_090 Hb_000562_050 Hb_000562_050 Hb_003124_030--Hb_000562_050 Hb_001008_050 Hb_001008_050 Hb_003124_030--Hb_001008_050 Hb_158092_080 Hb_158092_080 Hb_003124_030--Hb_158092_080 Hb_001789_020 Hb_001789_020 Hb_003124_030--Hb_001789_020 Hb_001085_290 Hb_001085_290 Hb_003124_030--Hb_001085_290 Hb_002475_040 Hb_002475_040 Hb_156850_090--Hb_002475_040 Hb_001935_160 Hb_001935_160 Hb_156850_090--Hb_001935_160 Hb_156850_090--Hb_001008_050 Hb_000181_100 Hb_000181_100 Hb_156850_090--Hb_000181_100 Hb_156850_090--Hb_158092_080 Hb_156850_090--Hb_000562_050 Hb_022250_010 Hb_022250_010 Hb_000562_050--Hb_022250_010 Hb_000562_050--Hb_001789_020 Hb_001059_130 Hb_001059_130 Hb_000562_050--Hb_001059_130 Hb_033642_060 Hb_033642_060 Hb_000562_050--Hb_033642_060 Hb_006355_020 Hb_006355_020 Hb_000562_050--Hb_006355_020 Hb_000320_470 Hb_000320_470 Hb_001008_050--Hb_000320_470 Hb_001008_050--Hb_000181_100 Hb_002391_050 Hb_002391_050 Hb_001008_050--Hb_002391_050 Hb_001008_050--Hb_001935_160 Hb_001008_070 Hb_001008_070 Hb_001008_050--Hb_001008_070 Hb_089246_010 Hb_089246_010 Hb_001008_050--Hb_089246_010 Hb_007123_050 Hb_007123_050 Hb_158092_080--Hb_007123_050 Hb_158092_080--Hb_002475_040 Hb_004064_050 Hb_004064_050 Hb_158092_080--Hb_004064_050 Hb_000284_230 Hb_000284_230 Hb_158092_080--Hb_000284_230 Hb_007894_160 Hb_007894_160 Hb_158092_080--Hb_007894_160 Hb_000608_300 Hb_000608_300 Hb_158092_080--Hb_000608_300 Hb_001789_020--Hb_158092_080 Hb_003398_100 Hb_003398_100 Hb_001789_020--Hb_003398_100 Hb_007035_040 Hb_007035_040 Hb_001789_020--Hb_007035_040 Hb_000011_270 Hb_000011_270 Hb_001789_020--Hb_000011_270 Hb_005701_090 Hb_005701_090 Hb_001789_020--Hb_005701_090 Hb_000088_050 Hb_000088_050 Hb_001085_290--Hb_000088_050 Hb_000017_230 Hb_000017_230 Hb_001085_290--Hb_000017_230 Hb_002007_260 Hb_002007_260 Hb_001085_290--Hb_002007_260 Hb_001552_030 Hb_001552_030 Hb_001085_290--Hb_001552_030 Hb_060980_010 Hb_060980_010 Hb_001085_290--Hb_060980_010 Hb_085742_010 Hb_085742_010 Hb_001085_290--Hb_085742_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.09609 1.7332 2.49963 2.42783 1.43825 1.65673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.195874 0.269602 1.49138 3.01827 4.02618

CAGE analysis