Hb_000883_030

Information

Type -
Description -
Location Contig883: 38789-42515
Sequence    

Annotation

kegg
ID pop:POPTR_0003s08310g
description hypothetical protein
nr
ID XP_012075409.1
description PREDICTED: uncharacterized protein LOC105636683 [Jatropha curcas]
swissprot
ID Q9SLG9
description Phosphatidylinositol 4-phosphate 5-kinase 5 OS=Arabidopsis thaliana GN=PIP5K5 PE=2 SV=1
trembl
ID U5GIM6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s08310g PE=4 SV=1
Gene Ontology
ID GO:0016301
description histone h3 k4-specific methyltransferase set7 9 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61450: 39194-39388 , PASA_asmbl_61451: 39459-42499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000883_030 0.0 - - PREDICTED: uncharacterized protein LOC105636683 [Jatropha curcas]
2 Hb_004117_100 0.1204961484 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
3 Hb_003912_030 0.1311481649 - - PREDICTED: uncharacterized protein LOC105638204 [Jatropha curcas]
4 Hb_000363_460 0.1378056737 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_001440_040 0.1511710546 - - hypothetical protein POPTR_0008s03520g [Populus trichocarpa]
6 Hb_002233_100 0.1513105509 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Malus domestica]
7 Hb_000853_210 0.1522990518 - - PREDICTED: uncharacterized protein LOC105642575 isoform X1 [Jatropha curcas]
8 Hb_001322_170 0.1536094557 - - PREDICTED: bax inhibitor 1-like [Jatropha curcas]
9 Hb_048476_170 0.1570218941 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
10 Hb_104812_010 0.1574166715 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Populus euphratica]
11 Hb_011004_020 0.159558885 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
12 Hb_004680_120 0.1596650209 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
13 Hb_000796_040 0.1613885459 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_011344_020 0.1630803497 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
15 Hb_000739_310 0.1682177853 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
16 Hb_067402_010 0.169569391 - - hypothetical protein CISIN_1g0029712mg, partial [Citrus sinensis]
17 Hb_000714_040 0.16965059 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
18 Hb_000032_470 0.17123276 - - PREDICTED: uncharacterized protein LOC103415826 [Malus domestica]
19 Hb_034432_030 0.1728735456 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
20 Hb_064903_010 0.1730805545 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]

Gene co-expression network

sample Hb_000883_030 Hb_000883_030 Hb_004117_100 Hb_004117_100 Hb_000883_030--Hb_004117_100 Hb_003912_030 Hb_003912_030 Hb_000883_030--Hb_003912_030 Hb_000363_460 Hb_000363_460 Hb_000883_030--Hb_000363_460 Hb_001440_040 Hb_001440_040 Hb_000883_030--Hb_001440_040 Hb_002233_100 Hb_002233_100 Hb_000883_030--Hb_002233_100 Hb_000853_210 Hb_000853_210 Hb_000883_030--Hb_000853_210 Hb_000313_260 Hb_000313_260 Hb_004117_100--Hb_000313_260 Hb_000463_140 Hb_000463_140 Hb_004117_100--Hb_000463_140 Hb_034432_030 Hb_034432_030 Hb_004117_100--Hb_034432_030 Hb_004117_100--Hb_000853_210 Hb_005488_150 Hb_005488_150 Hb_004117_100--Hb_005488_150 Hb_048476_170 Hb_048476_170 Hb_004117_100--Hb_048476_170 Hb_003912_030--Hb_000853_210 Hb_004680_120 Hb_004680_120 Hb_003912_030--Hb_004680_120 Hb_000086_440 Hb_000086_440 Hb_003912_030--Hb_000086_440 Hb_000667_030 Hb_000667_030 Hb_003912_030--Hb_000667_030 Hb_003912_030--Hb_004117_100 Hb_003912_030--Hb_034432_030 Hb_007304_110 Hb_007304_110 Hb_000363_460--Hb_007304_110 Hb_001136_100 Hb_001136_100 Hb_000363_460--Hb_001136_100 Hb_000363_460--Hb_004117_100 Hb_001136_090 Hb_001136_090 Hb_000363_460--Hb_001136_090 Hb_000363_460--Hb_048476_170 Hb_002367_130 Hb_002367_130 Hb_000363_460--Hb_002367_130 Hb_001235_230 Hb_001235_230 Hb_001440_040--Hb_001235_230 Hb_001401_060 Hb_001401_060 Hb_001440_040--Hb_001401_060 Hb_032920_130 Hb_032920_130 Hb_001440_040--Hb_032920_130 Hb_001440_040--Hb_005488_150 Hb_002044_170 Hb_002044_170 Hb_001440_040--Hb_002044_170 Hb_000069_320 Hb_000069_320 Hb_001440_040--Hb_000069_320 Hb_000041_090 Hb_000041_090 Hb_002233_100--Hb_000041_090 Hb_000046_190 Hb_000046_190 Hb_002233_100--Hb_000046_190 Hb_004108_100 Hb_004108_100 Hb_002233_100--Hb_004108_100 Hb_002233_100--Hb_000853_210 Hb_014267_010 Hb_014267_010 Hb_002233_100--Hb_014267_010 Hb_064903_010 Hb_064903_010 Hb_002233_100--Hb_064903_010 Hb_000796_040 Hb_000796_040 Hb_000853_210--Hb_000796_040 Hb_000009_600 Hb_000009_600 Hb_000853_210--Hb_000009_600 Hb_000853_210--Hb_034432_030 Hb_004228_010 Hb_004228_010 Hb_000853_210--Hb_004228_010 Hb_007904_030 Hb_007904_030 Hb_000853_210--Hb_007904_030 Hb_004306_080 Hb_004306_080 Hb_000853_210--Hb_004306_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.17373 6.14158 5.6163 7.5793 24.7135 8.19107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.65522 3.42844 13.2719 7.31756 17.7716

CAGE analysis