Hb_000990_060

Information

Type -
Description -
Location Contig990: 113689-119354
Sequence    

Annotation

kegg
ID rcu:RCOM_0802530
description hypothetical protein
nr
ID XP_012077423.1
description PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
swissprot
ID Q9LYD9
description Protein EMBRYONIC FLOWER 1 OS=Arabidopsis thaliana GN=EMF1 PE=1 SV=1
trembl
ID A0A067KPJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07766 PE=4 SV=1
Gene Ontology
ID GO:0044699
description protein embryonic flower 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64760: 114835-115420 , PASA_asmbl_64762: 119147-119693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000990_060 0.0 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
2 Hb_024468_020 0.1672592339 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
3 Hb_000016_190 0.1785249697 - - ABC transporter B family member 28 [Glycine soja]
4 Hb_003777_050 0.1794901087 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
5 Hb_000239_020 0.1891528719 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
6 Hb_055101_010 0.1901017843 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_004785_140 0.1924287294 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
8 Hb_000327_220 0.1956690885 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
9 Hb_002110_020 0.1992902878 - - PREDICTED: transcription factor bHLH145 [Jatropha curcas]
10 Hb_001314_020 0.1996454005 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
11 Hb_005224_010 0.2036538752 - - glycine-rich protein [Bruguiera gymnorhiza]
12 Hb_025557_030 0.204311206 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
13 Hb_011030_020 0.2064374205 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
14 Hb_000392_310 0.2072144326 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004200_020 0.2094582858 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
16 Hb_001189_050 0.2124924224 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
17 Hb_000789_220 0.2126974262 - - phosphofructokinase [Hevea brasiliensis]
18 Hb_002205_190 0.2150036535 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
19 Hb_005542_060 0.2154586104 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_080952_010 0.2166372238 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20770 [Jatropha curcas]

Gene co-expression network

sample Hb_000990_060 Hb_000990_060 Hb_024468_020 Hb_024468_020 Hb_000990_060--Hb_024468_020 Hb_000016_190 Hb_000016_190 Hb_000990_060--Hb_000016_190 Hb_003777_050 Hb_003777_050 Hb_000990_060--Hb_003777_050 Hb_000239_020 Hb_000239_020 Hb_000990_060--Hb_000239_020 Hb_055101_010 Hb_055101_010 Hb_000990_060--Hb_055101_010 Hb_004785_140 Hb_004785_140 Hb_000990_060--Hb_004785_140 Hb_024468_020--Hb_003777_050 Hb_005224_010 Hb_005224_010 Hb_024468_020--Hb_005224_010 Hb_024468_020--Hb_000016_190 Hb_003972_080 Hb_003972_080 Hb_024468_020--Hb_003972_080 Hb_003609_020 Hb_003609_020 Hb_024468_020--Hb_003609_020 Hb_000110_320 Hb_000110_320 Hb_024468_020--Hb_000110_320 Hb_000771_130 Hb_000771_130 Hb_000016_190--Hb_000771_130 Hb_000327_220 Hb_000327_220 Hb_000016_190--Hb_000327_220 Hb_002756_020 Hb_002756_020 Hb_000016_190--Hb_002756_020 Hb_000432_050 Hb_000432_050 Hb_000016_190--Hb_000432_050 Hb_012799_100 Hb_012799_100 Hb_000016_190--Hb_012799_100 Hb_009314_010 Hb_009314_010 Hb_000016_190--Hb_009314_010 Hb_000009_450 Hb_000009_450 Hb_003777_050--Hb_000009_450 Hb_003777_050--Hb_000110_320 Hb_001437_130 Hb_001437_130 Hb_003777_050--Hb_001437_130 Hb_001856_200 Hb_001856_200 Hb_003777_050--Hb_001856_200 Hb_141990_040 Hb_141990_040 Hb_003777_050--Hb_141990_040 Hb_027393_030 Hb_027393_030 Hb_000239_020--Hb_027393_030 Hb_000367_260 Hb_000367_260 Hb_000239_020--Hb_000367_260 Hb_000549_040 Hb_000549_040 Hb_000239_020--Hb_000549_040 Hb_001504_330 Hb_001504_330 Hb_000239_020--Hb_001504_330 Hb_004993_060 Hb_004993_060 Hb_000239_020--Hb_004993_060 Hb_005542_060 Hb_005542_060 Hb_000239_020--Hb_005542_060 Hb_055101_010--Hb_004785_140 Hb_002205_190 Hb_002205_190 Hb_055101_010--Hb_002205_190 Hb_080952_010 Hb_080952_010 Hb_055101_010--Hb_080952_010 Hb_000362_120 Hb_000362_120 Hb_055101_010--Hb_000362_120 Hb_002496_040 Hb_002496_040 Hb_055101_010--Hb_002496_040 Hb_004785_140--Hb_002205_190 Hb_004785_140--Hb_005542_060 Hb_011030_020 Hb_011030_020 Hb_004785_140--Hb_011030_020 Hb_001493_180 Hb_001493_180 Hb_004785_140--Hb_001493_180 Hb_000236_140 Hb_000236_140 Hb_004785_140--Hb_000236_140 Hb_000445_040 Hb_000445_040 Hb_004785_140--Hb_000445_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.460398 2.16832 0.456257 0.341089 0.560609 0.285674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.931242 1.49158 5.38095 1.38309 0.554204

CAGE analysis