Hb_024468_020

Information

Type -
Description -
Location Contig24468: 7680-8804
Sequence    

Annotation

kegg
ID cit:102624372
description putative ribonuclease H protein At1g65750-like
nr
ID XP_006490009.1
description PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID A0A061FQ58
description Polynucleotidyl transferase, putative OS=Theobroma cacao GN=TCM_043935 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024468_020 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
2 Hb_003777_050 0.1498651791 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
3 Hb_005224_010 0.1543872447 - - glycine-rich protein [Bruguiera gymnorhiza]
4 Hb_000016_190 0.1612749341 - - ABC transporter B family member 28 [Glycine soja]
5 Hb_003972_080 0.1647239098 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
6 Hb_003609_020 0.1668320582 desease resistance Gene Name: Clusterin hypothetical protein CISIN_1g001897mg [Citrus sinensis]
7 Hb_000110_320 0.1668433227 - - PREDICTED: ceramide-1-phosphate transfer protein [Jatropha curcas]
8 Hb_000990_060 0.1672592339 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
9 Hb_001969_090 0.1685115848 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
10 Hb_000003_050 0.1724185648 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
11 Hb_025557_030 0.1734969178 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
12 Hb_002577_010 0.1736151829 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
13 Hb_000789_220 0.1762672548 - - phosphofructokinase [Hevea brasiliensis]
14 Hb_001123_320 0.1785474808 - - PREDICTED: uncharacterized protein LOC105647314 isoform X3 [Jatropha curcas]
15 Hb_001338_040 0.1786566912 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
16 Hb_000318_330 0.1791852527 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Jatropha curcas]
17 Hb_007747_140 0.1797188496 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
18 Hb_003994_060 0.1823445958 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
19 Hb_000406_120 0.1825174915 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
20 Hb_004410_100 0.1839630897 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]

Gene co-expression network

sample Hb_024468_020 Hb_024468_020 Hb_003777_050 Hb_003777_050 Hb_024468_020--Hb_003777_050 Hb_005224_010 Hb_005224_010 Hb_024468_020--Hb_005224_010 Hb_000016_190 Hb_000016_190 Hb_024468_020--Hb_000016_190 Hb_003972_080 Hb_003972_080 Hb_024468_020--Hb_003972_080 Hb_003609_020 Hb_003609_020 Hb_024468_020--Hb_003609_020 Hb_000110_320 Hb_000110_320 Hb_024468_020--Hb_000110_320 Hb_000009_450 Hb_000009_450 Hb_003777_050--Hb_000009_450 Hb_003777_050--Hb_000110_320 Hb_001437_130 Hb_001437_130 Hb_003777_050--Hb_001437_130 Hb_001856_200 Hb_001856_200 Hb_003777_050--Hb_001856_200 Hb_141990_040 Hb_141990_040 Hb_003777_050--Hb_141990_040 Hb_000327_220 Hb_000327_220 Hb_005224_010--Hb_000327_220 Hb_002239_060 Hb_002239_060 Hb_005224_010--Hb_002239_060 Hb_001159_080 Hb_001159_080 Hb_005224_010--Hb_001159_080 Hb_005489_100 Hb_005489_100 Hb_005224_010--Hb_005489_100 Hb_005224_010--Hb_003972_080 Hb_009314_010 Hb_009314_010 Hb_005224_010--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_000016_190--Hb_000771_130 Hb_000016_190--Hb_000327_220 Hb_002756_020 Hb_002756_020 Hb_000016_190--Hb_002756_020 Hb_000432_050 Hb_000432_050 Hb_000016_190--Hb_000432_050 Hb_012799_100 Hb_012799_100 Hb_000016_190--Hb_012799_100 Hb_000016_190--Hb_009314_010 Hb_003462_120 Hb_003462_120 Hb_003972_080--Hb_003462_120 Hb_001481_140 Hb_001481_140 Hb_003972_080--Hb_001481_140 Hb_003783_030 Hb_003783_030 Hb_003972_080--Hb_003783_030 Hb_000007_140 Hb_000007_140 Hb_003972_080--Hb_000007_140 Hb_036790_020 Hb_036790_020 Hb_003972_080--Hb_036790_020 Hb_004705_140 Hb_004705_140 Hb_003609_020--Hb_004705_140 Hb_000045_150 Hb_000045_150 Hb_003609_020--Hb_000045_150 Hb_003994_060 Hb_003994_060 Hb_003609_020--Hb_003994_060 Hb_073562_010 Hb_073562_010 Hb_003609_020--Hb_073562_010 Hb_001969_090 Hb_001969_090 Hb_003609_020--Hb_001969_090 Hb_000366_090 Hb_000366_090 Hb_000110_320--Hb_000366_090 Hb_001956_070 Hb_001956_070 Hb_000110_320--Hb_001956_070 Hb_000117_090 Hb_000117_090 Hb_000110_320--Hb_000117_090 Hb_168319_030 Hb_168319_030 Hb_000110_320--Hb_168319_030 Hb_000175_060 Hb_000175_060 Hb_000110_320--Hb_000175_060 Hb_011173_050 Hb_011173_050 Hb_000110_320--Hb_011173_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.509676 0.902493 0.343289 0.170817 0.246881 0.313029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.681092 1.13773 2.14036 1.25465 0.131751

CAGE analysis