Hb_000016_190

Information

Type -
Description -
Location Contig16: 208075-210691
Sequence    

Annotation

kegg
ID cit:102617635
description ABC transporter B family member 28-like
nr
ID KHN40250.1
description ABC transporter B family member 28 [Glycine soja]
swissprot
ID Q8LPQ6
description ABC transporter B family member 28 OS=Arabidopsis thaliana GN=ABCB28 PE=2 SV=1
trembl
ID A0A0B2S4S1
description ABC transporter B family member 28 OS=Glycine soja GN=glysoja_038933 PE=3 SV=1
Gene Ontology
ID GO:0005524
description abc transporter b family member 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_190 0.0 - - ABC transporter B family member 28 [Glycine soja]
2 Hb_000771_130 0.1143807152 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
3 Hb_000327_220 0.1218899288 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
4 Hb_002756_020 0.1450536368 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
5 Hb_000432_050 0.1479787968 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
6 Hb_012799_100 0.1509339162 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
7 Hb_009314_010 0.1565791035 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
8 Hb_005224_010 0.1568623048 - - glycine-rich protein [Bruguiera gymnorhiza]
9 Hb_000019_060 0.1592969943 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
10 Hb_005839_110 0.1606513496 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
11 Hb_029510_040 0.1612546323 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
12 Hb_024468_020 0.1612749341 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
13 Hb_000110_320 0.1618870835 - - PREDICTED: ceramide-1-phosphate transfer protein [Jatropha curcas]
14 Hb_000161_150 0.1618978781 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
15 Hb_005489_100 0.1642509122 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011030_020 0.1664511179 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
17 Hb_000574_350 0.1678070887 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
18 Hb_005686_030 0.1679941771 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Jatropha curcas]
19 Hb_001189_050 0.1693452518 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
20 Hb_000196_080 0.1709179153 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000016_190 Hb_000016_190 Hb_000771_130 Hb_000771_130 Hb_000016_190--Hb_000771_130 Hb_000327_220 Hb_000327_220 Hb_000016_190--Hb_000327_220 Hb_002756_020 Hb_002756_020 Hb_000016_190--Hb_002756_020 Hb_000432_050 Hb_000432_050 Hb_000016_190--Hb_000432_050 Hb_012799_100 Hb_012799_100 Hb_000016_190--Hb_012799_100 Hb_009314_010 Hb_009314_010 Hb_000016_190--Hb_009314_010 Hb_000161_150 Hb_000161_150 Hb_000771_130--Hb_000161_150 Hb_000771_130--Hb_000432_050 Hb_000771_130--Hb_009314_010 Hb_005839_110 Hb_005839_110 Hb_000771_130--Hb_005839_110 Hb_000562_040 Hb_000562_040 Hb_000771_130--Hb_000562_040 Hb_000327_220--Hb_002756_020 Hb_011030_020 Hb_011030_020 Hb_000327_220--Hb_011030_020 Hb_001159_080 Hb_001159_080 Hb_000327_220--Hb_001159_080 Hb_005224_010 Hb_005224_010 Hb_000327_220--Hb_005224_010 Hb_003551_050 Hb_003551_050 Hb_000327_220--Hb_003551_050 Hb_000789_220 Hb_000789_220 Hb_000327_220--Hb_000789_220 Hb_004429_070 Hb_004429_070 Hb_002756_020--Hb_004429_070 Hb_002290_040 Hb_002290_040 Hb_002756_020--Hb_002290_040 Hb_006816_450 Hb_006816_450 Hb_002756_020--Hb_006816_450 Hb_005614_050 Hb_005614_050 Hb_002756_020--Hb_005614_050 Hb_002756_020--Hb_003551_050 Hb_001538_140 Hb_001538_140 Hb_000432_050--Hb_001538_140 Hb_029510_040 Hb_029510_040 Hb_000432_050--Hb_029510_040 Hb_000432_050--Hb_005839_110 Hb_000432_050--Hb_002756_020 Hb_000432_050--Hb_009314_010 Hb_002205_130 Hb_002205_130 Hb_012799_100--Hb_002205_130 Hb_000019_060 Hb_000019_060 Hb_012799_100--Hb_000019_060 Hb_012799_100--Hb_011030_020 Hb_001189_050 Hb_001189_050 Hb_012799_100--Hb_001189_050 Hb_003642_050 Hb_003642_050 Hb_012799_100--Hb_003642_050 Hb_168319_030 Hb_168319_030 Hb_012799_100--Hb_168319_030 Hb_009314_010--Hb_000161_150 Hb_009314_010--Hb_006816_450 Hb_009314_010--Hb_002756_020 Hb_009314_010--Hb_005224_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.697404 1.80345 0.757965 0.2548 1.03752 1.41491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.9478 4.22912 8.90761 2.37574 0.620059

CAGE analysis