Hb_055101_010

Information

Type -
Description -
Location Contig55101: 4350-8478
Sequence    

Annotation

kegg
ID egr:104417177
description uncharacterized LOC104417177
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061DW51
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_003698 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055101_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_004785_140 0.1888360889 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
3 Hb_000990_060 0.1901017843 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
4 Hb_002205_190 0.1947147468 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
5 Hb_080952_010 0.194772702 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20770 [Jatropha curcas]
6 Hb_000362_120 0.2006810128 - - glutamate receptor 2 plant, putative [Ricinus communis]
7 Hb_002496_040 0.2017156485 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]
8 Hb_001189_050 0.204440478 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
9 Hb_000172_560 0.2064293047 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]
10 Hb_005542_060 0.207436602 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000422_120 0.2100436458 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Jatropha curcas]
12 Hb_001493_180 0.2149096963 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
13 Hb_001277_090 0.2160367633 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
14 Hb_001387_030 0.2202833876 transcription factor TF Family: ERF hypothetical protein POPTR_0013s13920g [Populus trichocarpa]
15 Hb_002918_180 0.2232348487 - - hypothetical protein POPTR_0004s04740g [Populus trichocarpa]
16 Hb_004690_040 0.2233498351 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420 [Jatropha curcas]
17 Hb_001511_070 0.2252144884 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
18 Hb_056753_010 0.2264205986 - - PREDICTED: L-galactono-1,4-lactone dehydrogenase, mitochondrial isoform X2 [Jatropha curcas]
19 Hb_002110_020 0.2304473564 - - PREDICTED: transcription factor bHLH145 [Jatropha curcas]
20 Hb_075807_010 0.2315782742 - - PREDICTED: uncharacterized protein LOC105631775 [Jatropha curcas]

Gene co-expression network

sample Hb_055101_010 Hb_055101_010 Hb_004785_140 Hb_004785_140 Hb_055101_010--Hb_004785_140 Hb_000990_060 Hb_000990_060 Hb_055101_010--Hb_000990_060 Hb_002205_190 Hb_002205_190 Hb_055101_010--Hb_002205_190 Hb_080952_010 Hb_080952_010 Hb_055101_010--Hb_080952_010 Hb_000362_120 Hb_000362_120 Hb_055101_010--Hb_000362_120 Hb_002496_040 Hb_002496_040 Hb_055101_010--Hb_002496_040 Hb_004785_140--Hb_002205_190 Hb_005542_060 Hb_005542_060 Hb_004785_140--Hb_005542_060 Hb_011030_020 Hb_011030_020 Hb_004785_140--Hb_011030_020 Hb_001493_180 Hb_001493_180 Hb_004785_140--Hb_001493_180 Hb_000236_140 Hb_000236_140 Hb_004785_140--Hb_000236_140 Hb_000445_040 Hb_000445_040 Hb_004785_140--Hb_000445_040 Hb_024468_020 Hb_024468_020 Hb_000990_060--Hb_024468_020 Hb_000016_190 Hb_000016_190 Hb_000990_060--Hb_000016_190 Hb_003777_050 Hb_003777_050 Hb_000990_060--Hb_003777_050 Hb_000239_020 Hb_000239_020 Hb_000990_060--Hb_000239_020 Hb_000990_060--Hb_004785_140 Hb_000011_330 Hb_000011_330 Hb_002205_190--Hb_000011_330 Hb_000567_380 Hb_000567_380 Hb_002205_190--Hb_000567_380 Hb_003976_030 Hb_003976_030 Hb_002205_190--Hb_003976_030 Hb_008695_140 Hb_008695_140 Hb_002205_190--Hb_008695_140 Hb_002205_190--Hb_002496_040 Hb_002316_150 Hb_002316_150 Hb_080952_010--Hb_002316_150 Hb_006718_020 Hb_006718_020 Hb_080952_010--Hb_006718_020 Hb_000140_230 Hb_000140_230 Hb_080952_010--Hb_000140_230 Hb_002918_180 Hb_002918_180 Hb_080952_010--Hb_002918_180 Hb_000432_060 Hb_000432_060 Hb_080952_010--Hb_000432_060 Hb_168697_010 Hb_168697_010 Hb_080952_010--Hb_168697_010 Hb_000362_120--Hb_002496_040 Hb_000362_120--Hb_002205_190 Hb_001454_190 Hb_001454_190 Hb_000362_120--Hb_001454_190 Hb_012325_020 Hb_012325_020 Hb_000362_120--Hb_012325_020 Hb_000340_390 Hb_000340_390 Hb_000362_120--Hb_000340_390 Hb_007416_270 Hb_007416_270 Hb_000362_120--Hb_007416_270 Hb_003687_100 Hb_003687_100 Hb_002496_040--Hb_003687_100 Hb_001266_060 Hb_001266_060 Hb_002496_040--Hb_001266_060 Hb_000343_130 Hb_000343_130 Hb_002496_040--Hb_000343_130 Hb_000635_220 Hb_000635_220 Hb_002496_040--Hb_000635_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0117895 0.0277561 0.00410367 0.00389279 0.00527585 0.0144949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0119465 0.00940139 0.0901714 0.0149009 0.02012

CAGE analysis