Hb_000432_060

Information

Type -
Description -
Location Contig432: 52032-54296
Sequence    

Annotation

kegg
ID rcu:RCOM_0751140
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002529622.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID P93005
description Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
trembl
ID B9SUF3
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0751140 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at2g33680-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42299: 53371-53713
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000432_060 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_001171_060 0.1124518077 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]
3 Hb_008770_040 0.1223834498 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Malus domestica]
4 Hb_080952_010 0.1272045197 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20770 [Jatropha curcas]
5 Hb_168697_010 0.1285436267 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
6 Hb_000442_080 0.1363233663 - - hypothetical protein JCGZ_03373 [Jatropha curcas]
7 Hb_000140_230 0.1377139209 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
8 Hb_000107_420 0.1463704273 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
9 Hb_024404_020 0.1477049621 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
10 Hb_000011_330 0.1482219175 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
11 Hb_001085_060 0.1482549169 - - PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Jatropha curcas]
12 Hb_007064_010 0.1517385324 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
13 Hb_073562_010 0.1520747016 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
14 Hb_000549_040 0.1528887907 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
15 Hb_010874_020 0.1532194545 - - PREDICTED: uncharacterized protein LOC105636745 [Jatropha curcas]
16 Hb_005914_150 0.1551796344 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
17 Hb_003906_160 0.156327549 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
18 Hb_003020_050 0.1572054752 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_001366_310 0.1574141674 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
20 Hb_000680_050 0.1578680272 - - hypothetical protein JCGZ_24767 [Jatropha curcas]

Gene co-expression network

sample Hb_000432_060 Hb_000432_060 Hb_001171_060 Hb_001171_060 Hb_000432_060--Hb_001171_060 Hb_008770_040 Hb_008770_040 Hb_000432_060--Hb_008770_040 Hb_080952_010 Hb_080952_010 Hb_000432_060--Hb_080952_010 Hb_168697_010 Hb_168697_010 Hb_000432_060--Hb_168697_010 Hb_000442_080 Hb_000442_080 Hb_000432_060--Hb_000442_080 Hb_000140_230 Hb_000140_230 Hb_000432_060--Hb_000140_230 Hb_001171_060--Hb_008770_040 Hb_003071_020 Hb_003071_020 Hb_001171_060--Hb_003071_020 Hb_002006_040 Hb_002006_040 Hb_001171_060--Hb_002006_040 Hb_001366_310 Hb_001366_310 Hb_001171_060--Hb_001366_310 Hb_003544_110 Hb_003544_110 Hb_001171_060--Hb_003544_110 Hb_172632_110 Hb_172632_110 Hb_008770_040--Hb_172632_110 Hb_003373_030 Hb_003373_030 Hb_008770_040--Hb_003373_030 Hb_001268_110 Hb_001268_110 Hb_008770_040--Hb_001268_110 Hb_000866_170 Hb_000866_170 Hb_008770_040--Hb_000866_170 Hb_000245_040 Hb_000245_040 Hb_008770_040--Hb_000245_040 Hb_002316_150 Hb_002316_150 Hb_080952_010--Hb_002316_150 Hb_006718_020 Hb_006718_020 Hb_080952_010--Hb_006718_020 Hb_080952_010--Hb_000140_230 Hb_002918_180 Hb_002918_180 Hb_080952_010--Hb_002918_180 Hb_080952_010--Hb_168697_010 Hb_168697_010--Hb_000140_230 Hb_000680_050 Hb_000680_050 Hb_168697_010--Hb_000680_050 Hb_010874_020 Hb_010874_020 Hb_168697_010--Hb_010874_020 Hb_048219_010 Hb_048219_010 Hb_168697_010--Hb_048219_010 Hb_003020_050 Hb_003020_050 Hb_168697_010--Hb_003020_050 Hb_009486_200 Hb_009486_200 Hb_168697_010--Hb_009486_200 Hb_000832_020 Hb_000832_020 Hb_000442_080--Hb_000832_020 Hb_000011_330 Hb_000011_330 Hb_000442_080--Hb_000011_330 Hb_002217_300 Hb_002217_300 Hb_000442_080--Hb_002217_300 Hb_001266_060 Hb_001266_060 Hb_000442_080--Hb_001266_060 Hb_002205_190 Hb_002205_190 Hb_000442_080--Hb_002205_190 Hb_073452_010 Hb_073452_010 Hb_000442_080--Hb_073452_010 Hb_000264_320 Hb_000264_320 Hb_000140_230--Hb_000264_320 Hb_000140_230--Hb_003020_050 Hb_000140_230--Hb_002316_150 Hb_008775_040 Hb_008775_040 Hb_000140_230--Hb_008775_040 Hb_000140_230--Hb_048219_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.196457 0.481845 0.152217 0.29913 0.225195 0.451932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.078705 0.263203 0.824641 0.498382 0.196991

CAGE analysis