Hb_008770_040

Information

Type -
Description -
Location Contig8770: 60263-61697
Sequence    

Annotation

kegg
ID csv:101230681
description MACPF domain-containing protein At4g24290-like
nr
ID XP_008352074.1
description PREDICTED: MACPF domain-containing protein At4g24290-like [Malus domestica]
swissprot
ID -
description -
trembl
ID A0A0E0Q4H6
description Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61277: 34320-61668
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008770_040 0.0 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Malus domestica]
2 Hb_172632_110 0.0915337092 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
3 Hb_003373_030 0.0969124227 - - PREDICTED: serine/threonine-protein kinase ATG1 [Jatropha curcas]
4 Hb_001268_110 0.1060932833 - - PREDICTED: uncharacterized protein LOC105630183 isoform X2 [Jatropha curcas]
5 Hb_000866_170 0.1068127292 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000245_040 0.1150156988 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
7 Hb_001171_060 0.1154377131 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]
8 Hb_000140_210 0.1166081379 - - sec10, putative [Ricinus communis]
9 Hb_011016_050 0.1191898607 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
10 Hb_003847_030 0.120170031 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
11 Hb_071130_010 0.1202612613 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
12 Hb_004724_150 0.120811572 - - expressed protein, putative [Ricinus communis]
13 Hb_085781_020 0.1213422317 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
14 Hb_008770_030 0.1216455569 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
15 Hb_000432_060 0.1223834498 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_002391_210 0.1231520087 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
17 Hb_109002_020 0.1235082671 - - PREDICTED: CTP synthase-like [Jatropha curcas]
18 Hb_001761_130 0.1235198933 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
19 Hb_004449_080 0.1243700378 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
20 Hb_000890_210 0.1262585343 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]

Gene co-expression network

sample Hb_008770_040 Hb_008770_040 Hb_172632_110 Hb_172632_110 Hb_008770_040--Hb_172632_110 Hb_003373_030 Hb_003373_030 Hb_008770_040--Hb_003373_030 Hb_001268_110 Hb_001268_110 Hb_008770_040--Hb_001268_110 Hb_000866_170 Hb_000866_170 Hb_008770_040--Hb_000866_170 Hb_000245_040 Hb_000245_040 Hb_008770_040--Hb_000245_040 Hb_001171_060 Hb_001171_060 Hb_008770_040--Hb_001171_060 Hb_001761_130 Hb_001761_130 Hb_172632_110--Hb_001761_130 Hb_006831_040 Hb_006831_040 Hb_172632_110--Hb_006831_040 Hb_010174_110 Hb_010174_110 Hb_172632_110--Hb_010174_110 Hb_001021_080 Hb_001021_080 Hb_172632_110--Hb_001021_080 Hb_002391_210 Hb_002391_210 Hb_172632_110--Hb_002391_210 Hb_000002_010 Hb_000002_010 Hb_172632_110--Hb_000002_010 Hb_004143_040 Hb_004143_040 Hb_003373_030--Hb_004143_040 Hb_008770_030 Hb_008770_030 Hb_003373_030--Hb_008770_030 Hb_003373_030--Hb_000866_170 Hb_032278_030 Hb_032278_030 Hb_003373_030--Hb_032278_030 Hb_015807_150 Hb_015807_150 Hb_003373_030--Hb_015807_150 Hb_000890_210 Hb_000890_210 Hb_003373_030--Hb_000890_210 Hb_028227_070 Hb_028227_070 Hb_001268_110--Hb_028227_070 Hb_001268_110--Hb_000890_210 Hb_004607_050 Hb_004607_050 Hb_001268_110--Hb_004607_050 Hb_001268_110--Hb_000866_170 Hb_000999_050 Hb_000999_050 Hb_001268_110--Hb_000999_050 Hb_000185_040 Hb_000185_040 Hb_001268_110--Hb_000185_040 Hb_000866_170--Hb_000245_040 Hb_000297_010 Hb_000297_010 Hb_000866_170--Hb_000297_010 Hb_000395_190 Hb_000395_190 Hb_000866_170--Hb_000395_190 Hb_000866_170--Hb_000890_210 Hb_004724_150 Hb_004724_150 Hb_000866_170--Hb_004724_150 Hb_001341_170 Hb_001341_170 Hb_000866_170--Hb_001341_170 Hb_000107_490 Hb_000107_490 Hb_000245_040--Hb_000107_490 Hb_000245_040--Hb_000297_010 Hb_000245_040--Hb_004724_150 Hb_006938_080 Hb_006938_080 Hb_000245_040--Hb_006938_080 Hb_000245_040--Hb_000890_210 Hb_000432_060 Hb_000432_060 Hb_001171_060--Hb_000432_060 Hb_003071_020 Hb_003071_020 Hb_001171_060--Hb_003071_020 Hb_002006_040 Hb_002006_040 Hb_001171_060--Hb_002006_040 Hb_001366_310 Hb_001366_310 Hb_001171_060--Hb_001366_310 Hb_003544_110 Hb_003544_110 Hb_001171_060--Hb_003544_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.57799 16.9609 5.21896 14.6106 8.19724 17.5903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.3447 13.573 21.1826 23.3047 9.67924

CAGE analysis