Hb_001008_180

Information

Type -
Description -
Location Contig1008: 154289-159268
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 006_A19r.ab1: 153381-154166

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001008_180 0.0 - - -
2 Hb_000327_160 0.1444540814 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
3 Hb_000950_010 0.1569690749 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
4 Hb_002748_030 0.161143301 - - nucleotide binding protein, putative [Ricinus communis]
5 Hb_006816_470 0.1632126147 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
6 Hb_008159_010 0.1697548153 - - PREDICTED: 66 kDa stress protein [Jatropha curcas]
7 Hb_002748_020 0.1738719633 - - transducin family protein [Populus trichocarpa]
8 Hb_011861_100 0.1832314413 - - amino acid transporter, putative [Ricinus communis]
9 Hb_008176_010 0.187151543 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20090 [Jatropha curcas]
10 Hb_003044_080 0.1880676375 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
11 Hb_038564_010 0.1935920642 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
12 Hb_006277_010 0.1961258488 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
13 Hb_008725_170 0.1992905966 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Populus euphratica]
14 Hb_000215_280 0.2015353586 - - Protein-tyrosine phosphatase mitochondrial 1, mitochondrial precursor, putative [Ricinus communis]
15 Hb_000310_100 0.2041852965 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000094_210 0.2048155278 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
17 Hb_000853_200 0.206618081 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
18 Hb_007044_050 0.209166774 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
19 Hb_022593_010 0.2097861033 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
20 Hb_000505_150 0.20979836 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]

Gene co-expression network

sample Hb_001008_180 Hb_001008_180 Hb_000327_160 Hb_000327_160 Hb_001008_180--Hb_000327_160 Hb_000950_010 Hb_000950_010 Hb_001008_180--Hb_000950_010 Hb_002748_030 Hb_002748_030 Hb_001008_180--Hb_002748_030 Hb_006816_470 Hb_006816_470 Hb_001008_180--Hb_006816_470 Hb_008159_010 Hb_008159_010 Hb_001008_180--Hb_008159_010 Hb_002748_020 Hb_002748_020 Hb_001008_180--Hb_002748_020 Hb_000327_160--Hb_002748_020 Hb_000327_160--Hb_000950_010 Hb_000203_260 Hb_000203_260 Hb_000327_160--Hb_000203_260 Hb_000094_210 Hb_000094_210 Hb_000327_160--Hb_000094_210 Hb_000366_200 Hb_000366_200 Hb_000327_160--Hb_000366_200 Hb_003994_150 Hb_003994_150 Hb_000327_160--Hb_003994_150 Hb_006277_010 Hb_006277_010 Hb_000950_010--Hb_006277_010 Hb_002908_060 Hb_002908_060 Hb_000950_010--Hb_002908_060 Hb_003044_080 Hb_003044_080 Hb_000950_010--Hb_003044_080 Hb_000976_100 Hb_000976_100 Hb_000950_010--Hb_000976_100 Hb_004046_030 Hb_004046_030 Hb_000950_010--Hb_004046_030 Hb_142343_010 Hb_142343_010 Hb_002748_030--Hb_142343_010 Hb_002311_340 Hb_002311_340 Hb_002748_030--Hb_002311_340 Hb_001157_110 Hb_001157_110 Hb_002748_030--Hb_001157_110 Hb_000020_120 Hb_000020_120 Hb_002748_030--Hb_000020_120 Hb_163975_010 Hb_163975_010 Hb_002748_030--Hb_163975_010 Hb_002748_030--Hb_000327_160 Hb_008725_170 Hb_008725_170 Hb_006816_470--Hb_008725_170 Hb_002876_270 Hb_002876_270 Hb_006816_470--Hb_002876_270 Hb_008176_010 Hb_008176_010 Hb_006816_470--Hb_008176_010 Hb_000019_200 Hb_000019_200 Hb_006816_470--Hb_000019_200 Hb_006816_470--Hb_006277_010 Hb_000406_130 Hb_000406_130 Hb_006816_470--Hb_000406_130 Hb_164010_030 Hb_164010_030 Hb_008159_010--Hb_164010_030 Hb_001662_060 Hb_001662_060 Hb_008159_010--Hb_001662_060 Hb_000096_010 Hb_000096_010 Hb_008159_010--Hb_000096_010 Hb_004079_030 Hb_004079_030 Hb_008159_010--Hb_004079_030 Hb_006162_010 Hb_006162_010 Hb_008159_010--Hb_006162_010 Hb_000076_140 Hb_000076_140 Hb_008159_010--Hb_000076_140 Hb_001629_030 Hb_001629_030 Hb_002748_020--Hb_001629_030 Hb_002748_020--Hb_000019_200 Hb_005601_040 Hb_005601_040 Hb_002748_020--Hb_005601_040 Hb_000095_080 Hb_000095_080 Hb_002748_020--Hb_000095_080 Hb_000656_010 Hb_000656_010 Hb_002748_020--Hb_000656_010 Hb_006275_070 Hb_006275_070 Hb_002748_020--Hb_006275_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.679391 0.189909 0.439831 1.66234 0.149007 0.805254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.470344 0.369571 2.54408 1.79278 1.40558

CAGE analysis