Hb_002686_380

Information

Type -
Description -
Location Contig2686: 296828-305308
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_380 0.0 - - -
2 Hb_001703_120 0.241186042 - - PREDICTED: uncharacterized protein LOC105116966 isoform X2 [Populus euphratica]
3 Hb_002733_030 0.2481382205 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
4 Hb_003861_020 0.2567620754 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2 [Nelumbo nucifera]
5 Hb_025457_010 0.2568406975 - - -
6 Hb_176825_010 0.2595224898 - - PREDICTED: uncharacterized protein LOC105630857 isoform X2 [Jatropha curcas]
7 Hb_001965_010 0.2682675983 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
8 Hb_171789_010 0.2743297332 - - phosphoenolpyruvate carboxylase [Glycine max]
9 Hb_184403_010 0.2766761057 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Gossypium raimondii]
10 Hb_012180_030 0.2779138312 - - unnamed protein product [Vitis vinifera]
11 Hb_051407_010 0.2779648078 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
12 Hb_002419_030 0.2823069655 - - -
13 Hb_002666_020 0.2850823139 - - VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1 [Populus trichocarpa]
14 Hb_174473_010 0.2864275317 - - PREDICTED: uncharacterized protein LOC105775505 [Gossypium raimondii]
15 Hb_000284_100 0.2872635998 - - PREDICTED: transcription factor GTE11 isoform X2 [Populus euphratica]
16 Hb_000470_080 0.2880858113 - - Caldesmon, putative [Ricinus communis]
17 Hb_172970_010 0.289082136 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
18 Hb_000136_040 0.2903366141 - - PREDICTED: protein RRP5 homolog [Jatropha curcas]
19 Hb_000959_090 0.2917777718 - - conserved hypothetical protein [Ricinus communis]
20 Hb_048116_010 0.29375241 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]

Gene co-expression network

sample Hb_002686_380 Hb_002686_380 Hb_001703_120 Hb_001703_120 Hb_002686_380--Hb_001703_120 Hb_002733_030 Hb_002733_030 Hb_002686_380--Hb_002733_030 Hb_003861_020 Hb_003861_020 Hb_002686_380--Hb_003861_020 Hb_025457_010 Hb_025457_010 Hb_002686_380--Hb_025457_010 Hb_176825_010 Hb_176825_010 Hb_002686_380--Hb_176825_010 Hb_001965_010 Hb_001965_010 Hb_002686_380--Hb_001965_010 Hb_001703_120--Hb_003861_020 Hb_174473_010 Hb_174473_010 Hb_001703_120--Hb_174473_010 Hb_073452_010 Hb_073452_010 Hb_001703_120--Hb_073452_010 Hb_027402_140 Hb_027402_140 Hb_001703_120--Hb_027402_140 Hb_000193_310 Hb_000193_310 Hb_001703_120--Hb_000193_310 Hb_000684_440 Hb_000684_440 Hb_001703_120--Hb_000684_440 Hb_002733_030--Hb_025457_010 Hb_002028_100 Hb_002028_100 Hb_002733_030--Hb_002028_100 Hb_002232_450 Hb_002232_450 Hb_002733_030--Hb_002232_450 Hb_003881_050 Hb_003881_050 Hb_002733_030--Hb_003881_050 Hb_002733_030--Hb_001965_010 Hb_000362_120 Hb_000362_120 Hb_003861_020--Hb_000362_120 Hb_012979_020 Hb_012979_020 Hb_003861_020--Hb_012979_020 Hb_000136_040 Hb_000136_040 Hb_003861_020--Hb_000136_040 Hb_010480_030 Hb_010480_030 Hb_003861_020--Hb_010480_030 Hb_012180_020 Hb_012180_020 Hb_003861_020--Hb_012180_020 Hb_009421_010 Hb_009421_010 Hb_025457_010--Hb_009421_010 Hb_097968_010 Hb_097968_010 Hb_025457_010--Hb_097968_010 Hb_025457_010--Hb_002232_450 Hb_008370_010 Hb_008370_010 Hb_025457_010--Hb_008370_010 Hb_176825_010--Hb_174473_010 Hb_004899_060 Hb_004899_060 Hb_176825_010--Hb_004899_060 Hb_176825_010--Hb_003881_050 Hb_038011_010 Hb_038011_010 Hb_176825_010--Hb_038011_010 Hb_004724_230 Hb_004724_230 Hb_176825_010--Hb_004724_230 Hb_001496_030 Hb_001496_030 Hb_001965_010--Hb_001496_030 Hb_167300_010 Hb_167300_010 Hb_001965_010--Hb_167300_010 Hb_007545_020 Hb_007545_020 Hb_001965_010--Hb_007545_020 Hb_001965_010--Hb_001703_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36824 0.812664 0.393827 1.07767 2.96156 15.1079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.419504 0.494514 9.19028 10.9681 3.17678

CAGE analysis