Hb_008370_010

Information

Type -
Description -
Location Contig8370: 28024-32678
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008370_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_009421_010 0.152581588 - - -
3 Hb_005532_010 0.2260187824 - - -
4 Hb_161929_010 0.2306549999 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
5 Hb_021616_010 0.2346528157 - - -
6 Hb_010142_080 0.2366988707 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
7 Hb_089173_010 0.2459451642 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
8 Hb_006806_010 0.2460627584 - - -
9 Hb_002184_100 0.2480404447 - - hypothetical protein PRUPE_ppa020120mg [Prunus persica]
10 Hb_004157_110 0.2653430759 - - -
11 Hb_003226_290 0.2688944167 - - catalytic, putative [Ricinus communis]
12 Hb_025457_010 0.2705731845 - - -
13 Hb_013429_020 0.2708691415 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
14 Hb_162126_010 0.2846312925 - - -
15 Hb_000430_010 0.2855526955 - - -
16 Hb_125847_010 0.2872387512 - - -
17 Hb_008246_050 0.2899571654 - - -
18 Hb_005799_040 0.2899656248 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
19 Hb_048874_010 0.2911753926 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
20 Hb_169574_010 0.2916995929 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_008370_010 Hb_008370_010 Hb_009421_010 Hb_009421_010 Hb_008370_010--Hb_009421_010 Hb_005532_010 Hb_005532_010 Hb_008370_010--Hb_005532_010 Hb_161929_010 Hb_161929_010 Hb_008370_010--Hb_161929_010 Hb_021616_010 Hb_021616_010 Hb_008370_010--Hb_021616_010 Hb_010142_080 Hb_010142_080 Hb_008370_010--Hb_010142_080 Hb_089173_010 Hb_089173_010 Hb_008370_010--Hb_089173_010 Hb_009421_010--Hb_010142_080 Hb_009421_010--Hb_005532_010 Hb_025457_010 Hb_025457_010 Hb_009421_010--Hb_025457_010 Hb_013429_020 Hb_013429_020 Hb_009421_010--Hb_013429_020 Hb_020580_010 Hb_020580_010 Hb_009421_010--Hb_020580_010 Hb_062244_010 Hb_062244_010 Hb_005532_010--Hb_062244_010 Hb_005532_010--Hb_010142_080 Hb_005532_010--Hb_021616_010 Hb_004413_030 Hb_004413_030 Hb_005532_010--Hb_004413_030 Hb_005483_010 Hb_005483_010 Hb_005532_010--Hb_005483_010 Hb_001477_140 Hb_001477_140 Hb_161929_010--Hb_001477_140 Hb_161929_010--Hb_005532_010 Hb_003760_040 Hb_003760_040 Hb_161929_010--Hb_003760_040 Hb_161929_010--Hb_005483_010 Hb_161929_010--Hb_021616_010 Hb_021616_010--Hb_005483_010 Hb_021616_010--Hb_010142_080 Hb_174876_010 Hb_174876_010 Hb_021616_010--Hb_174876_010 Hb_021616_010--Hb_013429_020 Hb_003226_290 Hb_003226_290 Hb_010142_080--Hb_003226_290 Hb_010142_080--Hb_004413_030 Hb_010142_080--Hb_013429_020 Hb_001956_030 Hb_001956_030 Hb_089173_010--Hb_001956_030 Hb_006806_010 Hb_006806_010 Hb_089173_010--Hb_006806_010 Hb_008246_050 Hb_008246_050 Hb_089173_010--Hb_008246_050 Hb_005799_040 Hb_005799_040 Hb_089173_010--Hb_005799_040 Hb_048874_010 Hb_048874_010 Hb_089173_010--Hb_048874_010 Hb_169574_010 Hb_169574_010 Hb_089173_010--Hb_169574_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.00433822 0.00378305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0297148 0.0152971 0

CAGE analysis