Hb_005799_040

Information

Type -
Description -
Location Contig5799: 59440-60861
Sequence    

Annotation

kegg
ID rcu:RCOM_0850830
description hypothetical protein
nr
ID XP_012459951.1
description PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
swissprot
ID A8XI14
description Sugar transporter SWEET1 OS=Caenorhabditis briggsae GN=swt-1 PE=3 SV=1
trembl
ID A0A0D2VW19
description Gossypium raimondii chromosome 12, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_012G061100 PE=4 SV=1
Gene Ontology
ID GO:0005887
description bidirectional sugar transporter sweet5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005799_040 0.0 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
2 Hb_008246_050 4.61958e-05 - - -
3 Hb_048874_010 0.0062797337 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
4 Hb_169574_010 0.008826202 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
5 Hb_127993_010 0.0559908633 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
6 Hb_162126_010 0.0632038542 - - -
7 Hb_054362_010 0.0785841086 - - PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
8 Hb_000430_010 0.0824882532 - - -
9 Hb_125847_010 0.0985920704 - - -
10 Hb_005285_010 0.1536716922 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
11 Hb_168311_010 0.1554405539 - - -
12 Hb_000139_440 0.1778655625 - - unnamed protein product [Coffea canephora]
13 Hb_000590_020 0.188499969 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
14 Hb_047040_010 0.193051126 - - integrase [Gossypium herbaceum]
15 Hb_022206_060 0.2011710846 - - -
16 Hb_090826_010 0.2054478862 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
17 Hb_030928_010 0.2100657914 - - -
18 Hb_089173_010 0.2103623738 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
19 Hb_181535_010 0.210745623 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_001956_030 0.2109872105 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Populus euphratica]

Gene co-expression network

sample Hb_005799_040 Hb_005799_040 Hb_008246_050 Hb_008246_050 Hb_005799_040--Hb_008246_050 Hb_048874_010 Hb_048874_010 Hb_005799_040--Hb_048874_010 Hb_169574_010 Hb_169574_010 Hb_005799_040--Hb_169574_010 Hb_127993_010 Hb_127993_010 Hb_005799_040--Hb_127993_010 Hb_162126_010 Hb_162126_010 Hb_005799_040--Hb_162126_010 Hb_054362_010 Hb_054362_010 Hb_005799_040--Hb_054362_010 Hb_008246_050--Hb_048874_010 Hb_008246_050--Hb_169574_010 Hb_008246_050--Hb_127993_010 Hb_008246_050--Hb_162126_010 Hb_008246_050--Hb_054362_010 Hb_048874_010--Hb_169574_010 Hb_048874_010--Hb_127993_010 Hb_048874_010--Hb_162126_010 Hb_048874_010--Hb_054362_010 Hb_169574_010--Hb_127993_010 Hb_169574_010--Hb_054362_010 Hb_169574_010--Hb_162126_010 Hb_127993_010--Hb_054362_010 Hb_127993_010--Hb_162126_010 Hb_000430_010 Hb_000430_010 Hb_162126_010--Hb_000430_010 Hb_125847_010 Hb_125847_010 Hb_162126_010--Hb_125847_010 Hb_054362_010--Hb_162126_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.112464 0.0768476 0

CAGE analysis