Hb_008246_050

Information

Type -
Description -
Location Contig8246: 45805-46083
Sequence    

Annotation

kegg
ID bvg:104900678
description uncharacterized LOC104900678
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008246_050 0.0 - - -
2 Hb_005799_040 4.61958e-05 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
3 Hb_048874_010 0.0063259289 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
4 Hb_169574_010 0.0088723965 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
5 Hb_127993_010 0.0560370067 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
6 Hb_162126_010 0.0631577298 - - -
7 Hb_054362_010 0.0786302023 - - PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
8 Hb_000430_010 0.0824421809 - - -
9 Hb_125847_010 0.0985460533 - - -
10 Hb_005285_010 0.1536550596 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
11 Hb_168311_010 0.1553948249 - - -
12 Hb_000139_440 0.177819991 - - unnamed protein product [Coffea canephora]
13 Hb_000590_020 0.1884544817 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
14 Hb_047040_010 0.1930056767 - - integrase [Gossypium herbaceum]
15 Hb_022206_060 0.2011257061 - - -
16 Hb_090826_010 0.2054025465 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
17 Hb_030928_010 0.2100204949 - - -
18 Hb_089173_010 0.2103567705 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
19 Hb_181535_010 0.210700333 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_001956_030 0.211010653 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Populus euphratica]

Gene co-expression network

sample Hb_008246_050 Hb_008246_050 Hb_005799_040 Hb_005799_040 Hb_008246_050--Hb_005799_040 Hb_048874_010 Hb_048874_010 Hb_008246_050--Hb_048874_010 Hb_169574_010 Hb_169574_010 Hb_008246_050--Hb_169574_010 Hb_127993_010 Hb_127993_010 Hb_008246_050--Hb_127993_010 Hb_162126_010 Hb_162126_010 Hb_008246_050--Hb_162126_010 Hb_054362_010 Hb_054362_010 Hb_008246_050--Hb_054362_010 Hb_005799_040--Hb_048874_010 Hb_005799_040--Hb_169574_010 Hb_005799_040--Hb_127993_010 Hb_005799_040--Hb_162126_010 Hb_005799_040--Hb_054362_010 Hb_048874_010--Hb_169574_010 Hb_048874_010--Hb_127993_010 Hb_048874_010--Hb_162126_010 Hb_048874_010--Hb_054362_010 Hb_169574_010--Hb_127993_010 Hb_169574_010--Hb_054362_010 Hb_169574_010--Hb_162126_010 Hb_127993_010--Hb_054362_010 Hb_127993_010--Hb_162126_010 Hb_000430_010 Hb_000430_010 Hb_162126_010--Hb_000430_010 Hb_125847_010 Hb_125847_010 Hb_162126_010--Hb_125847_010 Hb_054362_010--Hb_162126_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.488324 0.333602 0

CAGE analysis