Hb_006806_010

Information

Type -
Description -
Location Contig6806: 3020-5166
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006806_010 0.0 - - -
2 Hb_089173_010 0.2089165621 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
3 Hb_125847_010 0.2121987609 - - -
4 Hb_000430_010 0.2128281075 - - -
5 Hb_162126_010 0.2151032185 - - -
6 Hb_168311_010 0.21930697 - - -
7 Hb_000139_440 0.2259353806 - - unnamed protein product [Coffea canephora]
8 Hb_000590_020 0.2297725997 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
9 Hb_047040_010 0.2315445614 - - integrase [Gossypium herbaceum]
10 Hb_008246_050 0.2332332462 - - -
11 Hb_005799_040 0.2332518903 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
12 Hb_022206_060 0.2348927148 - - -
13 Hb_048874_010 0.2358515997 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
14 Hb_090826_010 0.2367499275 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
15 Hb_169574_010 0.2369421279 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
16 Hb_005532_010 0.2376130751 - - -
17 Hb_030928_010 0.23882594 - - -
18 Hb_181535_010 0.239137664 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_000351_030 0.2402099329 - - putative NBS-LRR type disease resistance protein [Prunus persica]
20 Hb_139388_010 0.240354118 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_006806_010 Hb_006806_010 Hb_089173_010 Hb_089173_010 Hb_006806_010--Hb_089173_010 Hb_125847_010 Hb_125847_010 Hb_006806_010--Hb_125847_010 Hb_000430_010 Hb_000430_010 Hb_006806_010--Hb_000430_010 Hb_162126_010 Hb_162126_010 Hb_006806_010--Hb_162126_010 Hb_168311_010 Hb_168311_010 Hb_006806_010--Hb_168311_010 Hb_000139_440 Hb_000139_440 Hb_006806_010--Hb_000139_440 Hb_001956_030 Hb_001956_030 Hb_089173_010--Hb_001956_030 Hb_008246_050 Hb_008246_050 Hb_089173_010--Hb_008246_050 Hb_005799_040 Hb_005799_040 Hb_089173_010--Hb_005799_040 Hb_048874_010 Hb_048874_010 Hb_089173_010--Hb_048874_010 Hb_169574_010 Hb_169574_010 Hb_089173_010--Hb_169574_010 Hb_125847_010--Hb_000430_010 Hb_125847_010--Hb_162126_010 Hb_125847_010--Hb_168311_010 Hb_125847_010--Hb_000139_440 Hb_000590_020 Hb_000590_020 Hb_125847_010--Hb_000590_020 Hb_047040_010 Hb_047040_010 Hb_125847_010--Hb_047040_010 Hb_000430_010--Hb_162126_010 Hb_000430_010--Hb_168311_010 Hb_000430_010--Hb_008246_050 Hb_000430_010--Hb_005799_040 Hb_000430_010--Hb_048874_010 Hb_162126_010--Hb_008246_050 Hb_162126_010--Hb_005799_040 Hb_162126_010--Hb_048874_010 Hb_162126_010--Hb_169574_010 Hb_168311_010--Hb_000139_440 Hb_168311_010--Hb_000590_020 Hb_168311_010--Hb_047040_010 Hb_022206_060 Hb_022206_060 Hb_168311_010--Hb_022206_060 Hb_090826_010 Hb_090826_010 Hb_168311_010--Hb_090826_010 Hb_030928_010 Hb_030928_010 Hb_168311_010--Hb_030928_010 Hb_000139_440--Hb_000590_020 Hb_000139_440--Hb_047040_010 Hb_000139_440--Hb_022206_060 Hb_000139_440--Hb_090826_010 Hb_000139_440--Hb_030928_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.303488 0 0 0 0.376835 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 5.02367 2.09893 0

CAGE analysis