Hb_090826_010

Information

Type -
Description -
Location Contig90826: 9-882
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012468836.1
description PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A067KEX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13738 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_090826_010 0.0 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
2 Hb_022206_060 0.0043787861 - - -
3 Hb_030928_010 0.0047345497 - - -
4 Hb_181535_010 0.0054321343 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_000351_030 0.0078069022 - - putative NBS-LRR type disease resistance protein [Prunus persica]
6 Hb_139388_010 0.0081233874 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
7 Hb_001110_020 0.0086531959 - - hypothetical protein JCGZ_03693 [Jatropha curcas]
8 Hb_149358_010 0.0109030582 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_083493_050 0.0122855105 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
10 Hb_047040_010 0.0126768081 - - integrase [Gossypium herbaceum]
11 Hb_076908_010 0.0128082228 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
12 Hb_000174_190 0.0135328987 - - unnamed protein product [Coffea canephora]
13 Hb_000590_020 0.0173190872 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
14 Hb_004785_010 0.0176548161 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_000139_440 0.0281429779 - - unnamed protein product [Coffea canephora]
16 Hb_168311_010 0.0508660225 - - -
17 Hb_012286_070 0.0943094601 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
18 Hb_000450_140 0.0944078161 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
19 Hb_020818_010 0.0968166093 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
20 Hb_070247_010 0.098401319 - - hypothetical protein [Pseudomonas tolaasii]

Gene co-expression network

sample Hb_090826_010 Hb_090826_010 Hb_022206_060 Hb_022206_060 Hb_090826_010--Hb_022206_060 Hb_030928_010 Hb_030928_010 Hb_090826_010--Hb_030928_010 Hb_181535_010 Hb_181535_010 Hb_090826_010--Hb_181535_010 Hb_000351_030 Hb_000351_030 Hb_090826_010--Hb_000351_030 Hb_139388_010 Hb_139388_010 Hb_090826_010--Hb_139388_010 Hb_001110_020 Hb_001110_020 Hb_090826_010--Hb_001110_020 Hb_047040_010 Hb_047040_010 Hb_022206_060--Hb_047040_010 Hb_022206_060--Hb_030928_010 Hb_022206_060--Hb_181535_010 Hb_022206_060--Hb_000351_030 Hb_022206_060--Hb_139388_010 Hb_030928_010--Hb_181535_010 Hb_030928_010--Hb_000351_030 Hb_030928_010--Hb_139388_010 Hb_030928_010--Hb_001110_020 Hb_149358_010 Hb_149358_010 Hb_030928_010--Hb_149358_010 Hb_181535_010--Hb_000351_030 Hb_181535_010--Hb_139388_010 Hb_181535_010--Hb_001110_020 Hb_181535_010--Hb_149358_010 Hb_000351_030--Hb_139388_010 Hb_000351_030--Hb_001110_020 Hb_000351_030--Hb_149358_010 Hb_083493_050 Hb_083493_050 Hb_000351_030--Hb_083493_050 Hb_139388_010--Hb_001110_020 Hb_139388_010--Hb_149358_010 Hb_139388_010--Hb_083493_050 Hb_001110_020--Hb_149358_010 Hb_001110_020--Hb_083493_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.121225 0.0278769 0

CAGE analysis