Hb_139388_010

Information

Type -
Description -
Location Contig139388: 2594-3778
Sequence    

Annotation

kegg
ID egr:104447462
description uncharacterized LOC104447462
nr
ID XP_009772636.1
description PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M5X4P9
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025968mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_139388_010 0.0 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
2 Hb_000351_030 0.0003165017 - - putative NBS-LRR type disease resistance protein [Prunus persica]
3 Hb_001110_020 0.0005298389 - - hypothetical protein JCGZ_03693 [Jatropha curcas]
4 Hb_181535_010 0.0026913497 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_149358_010 0.002779873 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_030928_010 0.0033889436 - - -
7 Hb_083493_050 0.0041624652 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
8 Hb_076908_010 0.0046852372 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_000174_190 0.0054100022 - - unnamed protein product [Coffea canephora]
10 Hb_090826_010 0.0081233874 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
11 Hb_004785_010 0.0095325659 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_022206_060 0.0125018183 - - -
13 Hb_047040_010 0.0207985102 - - integrase [Gossypium herbaceum]
14 Hb_000590_020 0.0254396818 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
15 Hb_000139_440 0.0362600211 - - unnamed protein product [Coffea canephora]
16 Hb_168311_010 0.0589714932 - - -
17 Hb_012286_070 0.0862497376 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
18 Hb_000450_140 0.0863482452 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
19 Hb_020818_010 0.0887608168 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
20 Hb_070247_010 0.0903480815 - - hypothetical protein [Pseudomonas tolaasii]

Gene co-expression network

sample Hb_139388_010 Hb_139388_010 Hb_000351_030 Hb_000351_030 Hb_139388_010--Hb_000351_030 Hb_001110_020 Hb_001110_020 Hb_139388_010--Hb_001110_020 Hb_181535_010 Hb_181535_010 Hb_139388_010--Hb_181535_010 Hb_149358_010 Hb_149358_010 Hb_139388_010--Hb_149358_010 Hb_030928_010 Hb_030928_010 Hb_139388_010--Hb_030928_010 Hb_083493_050 Hb_083493_050 Hb_139388_010--Hb_083493_050 Hb_000351_030--Hb_001110_020 Hb_000351_030--Hb_181535_010 Hb_000351_030--Hb_030928_010 Hb_000351_030--Hb_149358_010 Hb_000351_030--Hb_083493_050 Hb_001110_020--Hb_149358_010 Hb_001110_020--Hb_181535_010 Hb_001110_020--Hb_083493_050 Hb_001110_020--Hb_030928_010 Hb_181535_010--Hb_030928_010 Hb_090826_010 Hb_090826_010 Hb_181535_010--Hb_090826_010 Hb_181535_010--Hb_149358_010 Hb_149358_010--Hb_083493_050 Hb_076908_010 Hb_076908_010 Hb_149358_010--Hb_076908_010 Hb_000174_190 Hb_000174_190 Hb_149358_010--Hb_000174_190 Hb_030928_010--Hb_090826_010 Hb_030928_010--Hb_149358_010 Hb_083493_050--Hb_076908_010 Hb_083493_050--Hb_000174_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.075042 0.0164241 0

CAGE analysis