Hb_000174_190

Information

Type -
Description -
Location Contig174: 225500-228255
Sequence    

Annotation

kegg
ID mdm:103435562
description probable LRR receptor-like serine/threonine-protein kinase At4g36180
nr
ID CDP12881.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID M0U617
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0005515
description receptor-like protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_190 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_076908_010 0.0007247805 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
3 Hb_083493_050 0.0012475607 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
4 Hb_149358_010 0.0026301625 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_004785_010 0.004122745 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_001110_020 0.0048801751 - - hypothetical protein JCGZ_03693 [Jatropha curcas]
7 Hb_139388_010 0.0054100022 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
8 Hb_000351_030 0.0057264957 - - putative NBS-LRR type disease resistance protein [Prunus persica]
9 Hb_181535_010 0.0081012536 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_030928_010 0.0087988115 - - -
11 Hb_090826_010 0.0135328987 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
12 Hb_022206_060 0.0179108286 - - -
13 Hb_047040_010 0.0262061346 - - integrase [Gossypium herbaceum]
14 Hb_000590_020 0.0308462896 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
15 Hb_000139_440 0.0416636157 - - unnamed protein product [Coffea canephora]
16 Hb_168311_010 0.0643660377 - - -
17 Hb_012286_070 0.0808771183 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
18 Hb_000450_140 0.0809757217 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
19 Hb_020818_010 0.0833906821 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
20 Hb_070247_010 0.0849795652 - - hypothetical protein [Pseudomonas tolaasii]

Gene co-expression network

sample Hb_000174_190 Hb_000174_190 Hb_076908_010 Hb_076908_010 Hb_000174_190--Hb_076908_010 Hb_083493_050 Hb_083493_050 Hb_000174_190--Hb_083493_050 Hb_149358_010 Hb_149358_010 Hb_000174_190--Hb_149358_010 Hb_004785_010 Hb_004785_010 Hb_000174_190--Hb_004785_010 Hb_001110_020 Hb_001110_020 Hb_000174_190--Hb_001110_020 Hb_139388_010 Hb_139388_010 Hb_000174_190--Hb_139388_010 Hb_076908_010--Hb_083493_050 Hb_076908_010--Hb_149358_010 Hb_076908_010--Hb_001110_020 Hb_076908_010--Hb_139388_010 Hb_076908_010--Hb_004785_010 Hb_083493_050--Hb_149358_010 Hb_083493_050--Hb_001110_020 Hb_083493_050--Hb_139388_010 Hb_000351_030 Hb_000351_030 Hb_083493_050--Hb_000351_030 Hb_149358_010--Hb_001110_020 Hb_149358_010--Hb_139388_010 Hb_149358_010--Hb_000351_030 Hb_004785_010--Hb_083493_050 Hb_004785_010--Hb_149358_010 Hb_004785_010--Hb_001110_020 Hb_004785_010--Hb_139388_010 Hb_001110_020--Hb_139388_010 Hb_001110_020--Hb_000351_030 Hb_181535_010 Hb_181535_010 Hb_001110_020--Hb_181535_010 Hb_030928_010 Hb_030928_010 Hb_001110_020--Hb_030928_010 Hb_139388_010--Hb_000351_030 Hb_139388_010--Hb_181535_010 Hb_139388_010--Hb_030928_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0425615 0.00900952 0

CAGE analysis