Hb_004785_010

Information

Type -
Description -
Location Contig4785: 13422-17898
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004785_010 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_000174_190 0.004122745 - - unnamed protein product [Coffea canephora]
3 Hb_076908_010 0.0048475131 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
4 Hb_083493_050 0.005370282 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
5 Hb_149358_010 0.0067528447 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_001110_020 0.0090027654 - - hypothetical protein JCGZ_03693 [Jatropha curcas]
7 Hb_139388_010 0.0095325659 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
8 Hb_000351_030 0.0098490424 - - putative NBS-LRR type disease resistance protein [Prunus persica]
9 Hb_181535_010 0.012223652 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_030928_010 0.0129211592 - - -
11 Hb_090826_010 0.0176548161 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
12 Hb_022206_060 0.0220322178 - - -
13 Hb_047040_010 0.0303261909 - - integrase [Gossypium herbaceum]
14 Hb_000590_020 0.0349654169 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
15 Hb_000139_440 0.045780089 - - unnamed protein product [Coffea canephora]
16 Hb_168311_010 0.0684748737 - - -
17 Hb_012286_070 0.0767802397 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
18 Hb_000450_140 0.076878913 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
19 Hb_020818_010 0.0792956219 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
20 Hb_070247_010 0.0808856914 - - hypothetical protein [Pseudomonas tolaasii]

Gene co-expression network

sample Hb_004785_010 Hb_004785_010 Hb_000174_190 Hb_000174_190 Hb_004785_010--Hb_000174_190 Hb_076908_010 Hb_076908_010 Hb_004785_010--Hb_076908_010 Hb_083493_050 Hb_083493_050 Hb_004785_010--Hb_083493_050 Hb_149358_010 Hb_149358_010 Hb_004785_010--Hb_149358_010 Hb_001110_020 Hb_001110_020 Hb_004785_010--Hb_001110_020 Hb_139388_010 Hb_139388_010 Hb_004785_010--Hb_139388_010 Hb_000174_190--Hb_076908_010 Hb_000174_190--Hb_083493_050 Hb_000174_190--Hb_149358_010 Hb_000174_190--Hb_001110_020 Hb_000174_190--Hb_139388_010 Hb_076908_010--Hb_083493_050 Hb_076908_010--Hb_149358_010 Hb_076908_010--Hb_001110_020 Hb_076908_010--Hb_139388_010 Hb_083493_050--Hb_149358_010 Hb_083493_050--Hb_001110_020 Hb_083493_050--Hb_139388_010 Hb_000351_030 Hb_000351_030 Hb_083493_050--Hb_000351_030 Hb_149358_010--Hb_001110_020 Hb_149358_010--Hb_139388_010 Hb_149358_010--Hb_000351_030 Hb_001110_020--Hb_139388_010 Hb_001110_020--Hb_000351_030 Hb_181535_010 Hb_181535_010 Hb_001110_020--Hb_181535_010 Hb_030928_010 Hb_030928_010 Hb_001110_020--Hb_030928_010 Hb_139388_010--Hb_000351_030 Hb_139388_010--Hb_181535_010 Hb_139388_010--Hb_030928_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0336415 0.0069408 0

CAGE analysis