Hb_181535_010

Information

Type -
Description -
Location Contig181535: 395-1285
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061FHZ8
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_033345 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181535_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_030928_010 0.0006975992 - - -
3 Hb_000351_030 0.0023748497 - - putative NBS-LRR type disease resistance protein [Prunus persica]
4 Hb_139388_010 0.0026913497 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
5 Hb_001110_020 0.0032211848 - - hypothetical protein JCGZ_03693 [Jatropha curcas]
6 Hb_090826_010 0.0054321343 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
7 Hb_149358_010 0.0054711888 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_083493_050 0.0068537511 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
9 Hb_076908_010 0.0073765095 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
10 Hb_000174_190 0.0081012536 - - unnamed protein product [Coffea canephora]
11 Hb_022206_060 0.0098107349 - - -
12 Hb_004785_010 0.012223652 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
13 Hb_047040_010 0.0181079659 - - integrase [Gossypium herbaceum]
14 Hb_000590_020 0.0227495594 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
15 Hb_000139_440 0.033571203 - - unnamed protein product [Coffea canephora]
16 Hb_168311_010 0.0562867741 - - -
17 Hb_012286_070 0.088920978 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
18 Hb_000450_140 0.0890194364 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
19 Hb_020818_010 0.091430781 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
20 Hb_070247_010 0.0930172155 - - hypothetical protein [Pseudomonas tolaasii]

Gene co-expression network

sample Hb_181535_010 Hb_181535_010 Hb_030928_010 Hb_030928_010 Hb_181535_010--Hb_030928_010 Hb_000351_030 Hb_000351_030 Hb_181535_010--Hb_000351_030 Hb_139388_010 Hb_139388_010 Hb_181535_010--Hb_139388_010 Hb_001110_020 Hb_001110_020 Hb_181535_010--Hb_001110_020 Hb_090826_010 Hb_090826_010 Hb_181535_010--Hb_090826_010 Hb_149358_010 Hb_149358_010 Hb_181535_010--Hb_149358_010 Hb_030928_010--Hb_000351_030 Hb_030928_010--Hb_139388_010 Hb_030928_010--Hb_001110_020 Hb_030928_010--Hb_090826_010 Hb_030928_010--Hb_149358_010 Hb_000351_030--Hb_139388_010 Hb_000351_030--Hb_001110_020 Hb_000351_030--Hb_149358_010 Hb_083493_050 Hb_083493_050 Hb_000351_030--Hb_083493_050 Hb_139388_010--Hb_001110_020 Hb_139388_010--Hb_149358_010 Hb_139388_010--Hb_083493_050 Hb_001110_020--Hb_149358_010 Hb_001110_020--Hb_083493_050 Hb_022206_060 Hb_022206_060 Hb_090826_010--Hb_022206_060 Hb_090826_010--Hb_000351_030 Hb_090826_010--Hb_139388_010 Hb_090826_010--Hb_001110_020 Hb_149358_010--Hb_083493_050 Hb_076908_010 Hb_076908_010 Hb_149358_010--Hb_076908_010 Hb_000174_190 Hb_000174_190 Hb_149358_010--Hb_000174_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0906743 0.020175 0

CAGE analysis