Hb_000139_440

Information

Type -
Description -
Location Contig139: 451936-453800
Sequence    

Annotation

kegg
ID mdm:103447863
description TMV resistance protein N-like
nr
ID CDP10822.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068UR96
description Coffea canephora DH200=94 genomic scaffold, scaffold_48 OS=Coffea canephora GN=GSCOC_T00031711001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_440 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_000590_020 0.0108277543 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
3 Hb_047040_010 0.0154702428 - - integrase [Gossypium herbaceum]
4 Hb_168311_010 0.0227455599 - - -
5 Hb_022206_060 0.0237663846 - - -
6 Hb_090826_010 0.0281429779 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
7 Hb_030928_010 0.0328741952 - - -
8 Hb_181535_010 0.033571203 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
9 Hb_000351_030 0.0359438396 - - putative NBS-LRR type disease resistance protein [Prunus persica]
10 Hb_139388_010 0.0362600211 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
11 Hb_001110_020 0.0367893107 - - hypothetical protein JCGZ_03693 [Jatropha curcas]
12 Hb_149358_010 0.0390368237 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_083493_050 0.0404177144 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
14 Hb_076908_010 0.0409398126 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
15 Hb_000174_190 0.0416636157 - - unnamed protein product [Coffea canephora]
16 Hb_004785_010 0.045780089 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_125847_010 0.0799395311 - - -
18 Hb_000430_010 0.0960343335 - - -
19 Hb_162126_010 0.1152528943 - - -
20 Hb_012286_070 0.1221618776 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_440 Hb_000139_440 Hb_000590_020 Hb_000590_020 Hb_000139_440--Hb_000590_020 Hb_047040_010 Hb_047040_010 Hb_000139_440--Hb_047040_010 Hb_168311_010 Hb_168311_010 Hb_000139_440--Hb_168311_010 Hb_022206_060 Hb_022206_060 Hb_000139_440--Hb_022206_060 Hb_090826_010 Hb_090826_010 Hb_000139_440--Hb_090826_010 Hb_030928_010 Hb_030928_010 Hb_000139_440--Hb_030928_010 Hb_000590_020--Hb_047040_010 Hb_000590_020--Hb_022206_060 Hb_000590_020--Hb_090826_010 Hb_000590_020--Hb_030928_010 Hb_181535_010 Hb_181535_010 Hb_000590_020--Hb_181535_010 Hb_047040_010--Hb_022206_060 Hb_047040_010--Hb_090826_010 Hb_047040_010--Hb_030928_010 Hb_047040_010--Hb_181535_010 Hb_168311_010--Hb_000590_020 Hb_168311_010--Hb_047040_010 Hb_168311_010--Hb_022206_060 Hb_168311_010--Hb_090826_010 Hb_168311_010--Hb_030928_010 Hb_022206_060--Hb_090826_010 Hb_022206_060--Hb_030928_010 Hb_022206_060--Hb_181535_010 Hb_000351_030 Hb_000351_030 Hb_022206_060--Hb_000351_030 Hb_139388_010 Hb_139388_010 Hb_022206_060--Hb_139388_010 Hb_090826_010--Hb_030928_010 Hb_090826_010--Hb_181535_010 Hb_090826_010--Hb_000351_030 Hb_090826_010--Hb_139388_010 Hb_001110_020 Hb_001110_020 Hb_090826_010--Hb_001110_020 Hb_030928_010--Hb_181535_010 Hb_030928_010--Hb_000351_030 Hb_030928_010--Hb_139388_010 Hb_030928_010--Hb_001110_020 Hb_149358_010 Hb_149358_010 Hb_030928_010--Hb_149358_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.790468 0.214548 0

CAGE analysis